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As of 29-Jun-2022 number of released structures: 12153
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NDB ID: PD0709  PDB ID: 2ASJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17D_DA807:DT913_E1.4630.2420.129-14.908-7.92124.973
112D_DA812:DT908_E1.92-0.255-0.603-9.026-18.0584.617
113D_DDG813:DC907_E0.897-0.1730.09-14.0750.16-0.13
11D_DG801:DC919_E0.474-0.4380.369-3.886-2.017-3.546
12D_DG802:DC918_E0.684-0.2820.064-16.763-9.8321.492
15D_DG805:DC915_E1.412-0.049-1.011-23.643-18.517-2.3
16D_DG806:DC914_E-2.2870.0060.171-3.995-12.90711.701
19D_DG809:DC911_E0.954-0.0730.584-9.955-14.7444.253
110D_DG810:DC910_E-0.4190.0820.293-6.408-8.9264.682
13D_DT803:DA917_E-1.497-0.065-0.1344.033-9.4671.202
14D_DT804:DA916_E0.034-0.074-0.76829.432-15.801-6.172
18D_DT808:DA912_E-0.805-0.096-0.0584.365-6.155-13.416
111D_DT811:DA909_E-0.455-0.360.0395.609-12.308-10.663
120H_DA1807:DT1913_J-0.4490.173-0.238-4.918-15.31620.218
125H_DA1812:DT1908_J0.222-0.357-0.213-1.499-14.939-11.705
126H_DDG1813:DC1907_J1.0860.623-0.111-5.602-8.4644.957
114H_DG1801:DC1919_J0.354-0.474-0.515-7.744-10.264-2.401
115H_DG1802:DC1918_J-2.599-0.1960.139-0.737-10.85527.678
118H_DG1805:DC1915_J-1.809-0.569-0.787-11.54-14.878-5.538
119H_DG1806:DC1914_J0.5981.071-0.467-13.418-29.0735.711
122H_DG1809:DC1911_J0.8110.051-0.533-13.685-18.603-4.63
123H_DG1810:DC1910_J-0.7960.021-0.186-3.256-13.6362.554
116H_DT1803:DA1917_J-0.95-0.023-0.1693.931-8.1355.615
117H_DT1804:DA1916_J-0.922-0.249-0.64219.57-13.112-0.778
121H_DT1808:DA1912_J-0.043-0.033-0.3973.786-8.989-4.314
124H_DT1811:DA1909_J-1.318-0.267-0.41212.697-12.906-7.386

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.