2ASJ: Base Pair Morphology Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: PD0709 PDB ID: 2ASJ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	D_DA807:DT913_E	1.463	0.242	0.129	-14.908	-7.921	24.973
1	12	D_DA812:DT908_E	1.92	-0.255	-0.603	-9.026	-18.058	4.617
1	13	D_DDG813:DC907_E	0.897	-0.173	0.09	-14.075	0.16	-0.13
1	1	D_DG801:DC919_E	0.474	-0.438	0.369	-3.886	-2.017	-3.546
1	2	D_DG802:DC918_E	0.684	-0.282	0.064	-16.763	-9.832	1.492
1	5	D_DG805:DC915_E	1.412	-0.049	-1.011	-23.643	-18.517	-2.3
1	6	D_DG806:DC914_E	-2.287	0.006	0.171	-3.995	-12.907	11.701
1	9	D_DG809:DC911_E	0.954	-0.073	0.584	-9.955	-14.744	4.253
1	10	D_DG810:DC910_E	-0.419	0.082	0.293	-6.408	-8.926	4.682
1	3	D_DT803:DA917_E	-1.497	-0.065	-0.134	4.033	-9.467	1.202
1	4	D_DT804:DA916_E	0.034	-0.074	-0.768	29.432	-15.801	-6.172
1	8	D_DT808:DA912_E	-0.805	-0.096	-0.058	4.365	-6.155	-13.416
1	11	D_DT811:DA909_E	-0.455	-0.36	0.039	5.609	-12.308	-10.663
1	20	H_DA1807:DT1913_J	-0.449	0.173	-0.238	-4.918	-15.316	20.218
1	25	H_DA1812:DT1908_J	0.222	-0.357	-0.213	-1.499	-14.939	-11.705
1	26	H_DDG1813:DC1907_J	1.086	0.623	-0.111	-5.602	-8.464	4.957
1	14	H_DG1801:DC1919_J	0.354	-0.474	-0.515	-7.744	-10.264	-2.401
1	15	H_DG1802:DC1918_J	-2.599	-0.196	0.139	-0.737	-10.855	27.678
1	18	H_DG1805:DC1915_J	-1.809	-0.569	-0.787	-11.54	-14.878	-5.538
1	19	H_DG1806:DC1914_J	0.598	1.071	-0.467	-13.418	-29.07	35.711
1	22	H_DG1809:DC1911_J	0.811	0.051	-0.533	-13.685	-18.603	-4.63
1	23	H_DG1810:DC1910_J	-0.796	0.021	-0.186	-3.256	-13.636	2.554
1	16	H_DT1803:DA1917_J	-0.95	-0.023	-0.169	3.931	-8.135	5.615
1	17	H_DT1804:DA1916_J	-0.922	-0.249	-0.642	19.57	-13.112	-0.778
1	21	H_DT1808:DA1912_J	-0.043	-0.033	-0.397	3.786	-8.989	-4.314
1	24	H_DT1811:DA1909_J	-1.318	-0.267	-0.412	12.697	-12.906	-7.386

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.