2AU4: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 2AU4 PDB ID: 2AU4

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	A_A4:U38_A	-0.573	-0.225	-0.074	23.306	-7.676	2.681
1	7	A_A7:A35_A	2.511	-2.997	0.017	3.474	-6.245	-112.885
1	5	A_C5:G37_A	0.135	-0.179	0.475	-0.141	-16.456	-1.711
1	13	A_C18:G27_A	0.509	-0.318	0.19	4.296	-27.277	5.82
1	15	A_C20:G25_A	0.048	-0.124	-0.799	20.912	5.668	-3.565
1	1	A_G1:C41_A	-0.085	-0.144	0.187	0.602	-19.202	-1.934
1	2	A_G2:C40_A	-0.11	-0.164	0.038	-1.706	-15.327	-2.164
1	3	A_G3:C39_A	-0.117	-0.164	0.613	8.475	-5.217	-2.03
1	6	A_G6:C36_A	-0.12	-0.148	-0.365	-2.631	-4.359	-1.377
1	11	A_G9:G29_A	-1.556	-2.205	0.485	-8.169	3.066	151.394
1	8	A_G12:A34_A	-4.555	0.811	0.498	14.757	-3.66	41.928
1	10	A_G15:A32_A	-5.232	0.148	-0.39	-16.546	14.95	55.243
1	12	A_G17:U28_A	-2.831	-0.376	0.122	6.601	-5.468	15.365
1	14	A_G19:C26_A	-0.121	-0.153	-0.438	-1.337	-4.127	-0.811
1	9	A_U14:A33_A	0.003	-0.249	-0.182	-2.938	47.915	12.585
1	16	A_U21:G24_A	0.461	-4.733	1.596	-31.531	25.587	-124.554

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.