A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: 2AU4  PDB ID: 2AU4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_A4:U38_A-0.573-0.225-0.07423.306-7.6762.681
17A_A7:A35_A2.511-2.9970.0173.474-6.245-112.885
15A_C5:G37_A0.135-0.1790.475-0.141-16.456-1.711
113A_C18:G27_A0.509-0.3180.194.296-27.2775.82
115A_C20:G25_A0.048-0.124-0.79920.9125.668-3.565
11A_G1:C41_A-0.085-0.1440.1870.602-19.202-1.934
12A_G2:C40_A-0.11-0.1640.038-1.706-15.327-2.164
13A_G3:C39_A-0.117-0.1640.6138.475-5.217-2.03
16A_G6:C36_A-0.12-0.148-0.365-2.631-4.359-1.377
111A_G9:G29_A-1.556-2.2050.485-8.1693.066151.394
18A_G12:A34_A-4.5550.8110.49814.757-3.6641.928
110A_G15:A32_A-5.2320.148-0.39-16.54614.9555.243
112A_G17:U28_A-2.831-0.3760.1226.601-5.46815.365
114A_G19:C26_A-0.121-0.153-0.438-1.337-4.127-0.811
19A_U14:A33_A0.003-0.249-0.182-2.93847.91512.585
116A_U21:G24_A0.461-4.7331.596-31.53125.587-124.554

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.