A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: AD0057  PDB ID: 2AXB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_DA5:S2M16_B0.239-0.0060.345-1.698-11.257-0.077
17A_DA7:DT14_B-0.078-0.178-0.007-1.808-12.9130.094
12A_DC2:DG19_B0.086-0.006-0.3246.277-12.9625.196
18A_DC8:DG13_B0.032-0.469-0.2146.209-13.825-3.363
110A_DC10:DG11_B0.235-0.429-0.009-7.285.905-1.153
11A_DG1:DC20_B-0.505-0.1570.0842.729-5.4-4.28
13A_DG3:DC18_B-0.498-0.1560.012-10.483-17.639-0.978
19A_DG9:DC12_B-0.292-0.015-0.277-12.369-12.0333.367
14A_DT4:DA17_B-0.402-0.132-0.302-4.107-18.9981.265
16A_S2M6:DA15_B-0.1760.037-0.2297.723-17.403-0.285

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.