2AXB: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

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NDB ID: AD0057 PDB ID: 2AXB

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_DA5:S2M16_B	0.239	-0.006	0.345	-1.698	-11.257	-0.077
1	7	A_DA7:DT14_B	-0.078	-0.178	-0.007	-1.808	-12.913	0.094
1	2	A_DC2:DG19_B	0.086	-0.006	-0.324	6.277	-12.962	5.196
1	8	A_DC8:DG13_B	0.032	-0.469	-0.214	6.209	-13.825	-3.363
1	10	A_DC10:DG11_B	0.235	-0.429	-0.009	-7.28	5.905	-1.153
1	1	A_DG1:DC20_B	-0.505	-0.157	0.084	2.729	-5.4	-4.28
1	3	A_DG3:DC18_B	-0.498	-0.156	0.012	-10.483	-17.639	-0.978
1	9	A_DG9:DC12_B	-0.292	-0.015	-0.277	-12.369	-12.033	3.367
1	4	A_DT4:DA17_B	-0.402	-0.132	-0.302	-4.107	-18.998	1.265
1	6	A_S2M6:DA15_B	-0.176	0.037	-0.229	7.723	-17.403	-0.285

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.