A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Nov-2020 number of released structures: 11059
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NDB ID: PR0182  PDB ID: 2AZ2 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_5BU4:A15_D0.064-0.1750.0150.608-9.3682.761
112C_5BU12:A7_D-0.055-0.101-0.086-1.145-14.3470.405
116C_5BU16:A3_D0.1-0.0970.263-1.021-10.8733.689
13C_A3:5BU16_D0.022-0.0740.212-3.113-8.4761.257
17C_A7:5BU12_D0.005-0.1530.1935.738-14.77-0.092
115C_A15:5BU4_D-0.016-0.158-0.156-1.969-8.489-0.092
12C_C2:G17_D0.063-0.1080.261-5.832-9.67-1.249
18C_C8:G11_D0.23-0.068-0.0024.498-12.2334.515
110C_C10:G9_D0.378-0.1230.0492.956-12.662.34
113C_C13:G6_D0.368-0.0910.31-4.02-11.8631.614
114C_C14:G5_D0.28-0.096-0.126-2.511-11.1431.434
118C_C18:G1_D0.347-0.1790.4560.343-7.595-0.66
11C_G1:C18_D-0.292-0.1320.04-5.476-9.7730.14
15C_G5:C14_D-0.099-0.1050.2394.552-5.990.973
16C_G6:C13_D-0.23-0.070.1336.243-10.4281.71
19C_G9:C10_D-0.323-0.17-0.001-4.5-11.6282.725
111C_G11:C8_D-0.321-0.031-0.036-0.286-12.135.052
117C_G17:C2_D-0.138-0.1460.0580.603-10.77-0.841

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.