2B2G: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: PR0179 PDB ID: 2B2G

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	R_A302:U316_R	0.144	-0.198	0.899	4.662	-24.846	-4.889
1	3	R_G304:C314_R	-0.058	-0.098	0.368	3.525	-15.133	-0.604
1	4	R_G306:C313_R	-0.138	-0.147	0.409	-0.898	-11.859	-5.025
1	5	R_G307:C312_R	-0.207	-0.173	0.413	7.992	-2.065	0.63
1	2	R_U303:A315_R	-0.146	-0.25	0.613	-2.764	-23.271	-0.839
1	6	S_A402:U416_S	0.197	0.021	0.185	25.962	-28.376	-3.941
1	8	S_G404:C414_S	-0.879	-1.18	1.287	-5.454	-4.308	0.67
1	9	S_G406:C413_S	-0.232	-0.071	0.318	-5.06	-17.624	-0.25
1	10	S_G407:C412_S	-0.198	-0.098	0.177	-2.382	-0.726	-1.043
1	7	S_U403:A415_S	0.022	-0.001	-0.272	1.886	-7.023	-12.249

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.