2B2G: Base Pair Morphology Step Parameters

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NDB ID: PR0179 PDB ID: 2B2G

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	RR_A302U303:A315U316_RR	0.66	-1.5	3.524	5.006	4.971	28.406	-4.109	-0.161	3.285	9.937	-10.008	29.251
1	3	RR_G304G306:C313C314_RR	-0.273	-2.315	3.182	-2.716	3.778	32.469	-4.709	0.046	2.914	6.713	4.827	32.792
1	4	RR_G306G307:C312C313_RR	0.138	-2.368	2.878	-1.709	3.282	33.815	-4.49	-0.466	2.633	5.622	2.927	34.011
1	2	RR_U303G304:C314A315_RR	0.244	-1.364	2.851	2.716	14.321	34.59	-3.624	-0.096	2.152	22.87	-4.338	37.449
1	5	SS_A402U403:A415U416_SS	-1.415	-1.732	4.004	-1.354	24.059	36.875	-4.826	1.755	2.518	33.96	1.912	43.82
1	7	SS_G404G406:C413C414_SS	-0.217	-2.383	2.847	9.987	9.954	36.194	-4.532	1.27	2.02	15.326	-15.376	38.758
1	8	SS_G406G407:C412C413_SS	-0.273	-1.955	2.901	0.348	8.005	35.383	-4.066	0.478	2.413	12.966	-0.563	36.251
1	6	SS_U403G404:C414A415_SS	1.252	-1.574	4.083	-11.845	-14.851	29.346	0.304	-4.43	3.694	-26.147	20.855	34.844

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.