2B3J: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0180 PDB ID: 2B3J

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	E_A31:U39_E	0.257	-0.085	0.087	-9.545	-15.031	-3.484
1	5	E_C32:A38_E	4.651	-1.036	0.346	-9.175	-12.741	-9.451
1	3	E_G30:C40_E	-0.516	-0.059	0.065	-5.141	-17.711	6.725
1	1	E_U28:A42_E	-0.804	-0.357	0.318	-6.361	-25.194	-10.751
1	2	E_U29:A41_E	-0.753	-0.224	0.096	2.844	-19.085	-9.686
1	9	F_A31:U39_F	0.383	0.175	0.059	-12.503	-18.151	-3.987
1	10	F_C32:A38_F	4.432	-0.888	0.485	-5.572	-13.265	-9.411
1	8	F_G30:C40_F	-0.209	-0.075	0.03	-8.98	-18.027	2.169
1	6	F_U28:A42_F	-1.021	-0.21	-0.71	6.568	-38.613	-9.737
1	7	F_U29:A41_F	0.402	-0.187	0.403	-6.606	-21.291	9.569
1	11	G_C32:G37_G	0.524	-0.015	0.635	-10.667	14.698	3.173
1	15	H_A31:U39_H	-0.247	-0.066	-0.048	-12.087	-15.642	-7.193
1	16	H_C32:A38_H	4.746	-1.093	0.41	-10.643	-11.499	-5.272
1	14	H_G30:C40_H	-0.056	0.236	-0.007	-11.714	-16.06	6.035
1	12	H_U28:A42_H	-0.334	0.135	-0.002	-0.061	-18.694	-6.256
1	13	H_U29:A41_H	-0.298	0.152	0.245	-2.491	-19.837	2.353

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.