A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0180  PDB ID: 2B3J 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14E_A31:U39_E0.257-0.0850.087-9.545-15.031-3.484
15E_C32:A38_E4.651-1.0360.346-9.175-12.741-9.451
13E_G30:C40_E-0.516-0.0590.065-5.141-17.7116.725
11E_U28:A42_E-0.804-0.3570.318-6.361-25.194-10.751
12E_U29:A41_E-0.753-0.2240.0962.844-19.085-9.686
19F_A31:U39_F0.3830.1750.059-12.503-18.151-3.987
110F_C32:A38_F4.432-0.8880.485-5.572-13.265-9.411
18F_G30:C40_F-0.209-0.0750.03-8.98-18.0272.169
16F_U28:A42_F-1.021-0.21-0.716.568-38.613-9.737
17F_U29:A41_F0.402-0.1870.403-6.606-21.2919.569
111G_C32:G37_G0.524-0.0150.635-10.66714.6983.173
115H_A31:U39_H-0.247-0.066-0.048-12.087-15.642-7.193
116H_C32:A38_H4.746-1.0930.41-10.643-11.499-5.272
114H_G30:C40_H-0.0560.236-0.007-11.714-16.066.035
112H_U28:A42_H-0.3340.135-0.002-0.061-18.694-6.256
113H_U29:A41_H-0.2980.1520.245-2.491-19.8372.353

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.