2BCV: Base Pair Morphology Parameters

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As of 17-Aug-2022 number of released structures: 12237

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NDB ID: PD0725 PDB ID: 2BCV

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	D_DC2:DG3_T	0.018	-0.055	0.019	-5.288	0.047	-2.129
1	3	D_DC3:DG2_T	0.151	-0.131	-0.131	-0.946	-1.799	1.135
1	1	D_DG1:DC4_T	-0.376	-0.169	-0.015	-16.318	-8.502	1.382
1	4	D_DG4:DC1_T	-0.155	-0.23	0.207	13.501	-3.916	-2.416
1	6	P_DA2:DT11_T	0.001	-0.133	0.139	-4.677	-7.816	2.057
1	9	P_DA5:DT8_T	0.094	-0.155	0.17	-0.629	-22.094	0.844
1	5	P_DC1:DG12_T	0.159	-0.094	0.44	-22.296	-13.513	1.801
1	7	P_DG3:DC10_T	-0.24	-0.146	0.128	-1.355	-6.839	-1.294
1	8	P_DT4:DA9_T	0.168	-0.052	-0.223	11.394	-0.64	0.628

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.