A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
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NDB ID: PD0725  PDB ID: 2BCV 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12D_DC2:DG3_T0.018-0.0550.019-5.2880.047-2.129
13D_DC3:DG2_T0.151-0.131-0.131-0.946-1.7991.135
11D_DG1:DC4_T-0.376-0.169-0.015-16.318-8.5021.382
14D_DG4:DC1_T-0.155-0.230.20713.501-3.916-2.416
16P_DA2:DT11_T0.001-0.1330.139-4.677-7.8162.057
19P_DA5:DT8_T0.094-0.1550.17-0.629-22.0940.844
15P_DC1:DG12_T0.159-0.0940.44-22.296-13.5131.801
17P_DG3:DC10_T-0.24-0.1460.128-1.355-6.839-1.294
18P_DT4:DA9_T0.168-0.052-0.22311.394-0.640.628

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.