A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID: DR0019  PDB ID: 2BE0 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17A_A8:U34_B0.187-0.2340.3776.093-12.3483.017
12A_C2:G41_B-0.113-0.1990.1780.138-5.548-4.437
15A_C5:G38_B0.223-0.052-0.143-5.677-6.022.595
16A_C7:G35_B0.413-0.0480.2127.154-19.6754.582
18A_C9:G33_B0.258-0.1510.1242.672-14.1371.169
19A_C10:G32_B0.076-0.0150.1440.117-8.7222.955
116A_C19:G24_B-0.021-0.131-0.2029.12-14.5052.941
118A_C21:G22_B0.198-0.241-0.0493.075-2.760.246
11A_G1:C42_B-0.126-0.247-0.123-6.536-2.91-2.103
13A_G3:C40_B0.071-0.0580.057-4.505-11.5823.368
110A_G11:C31_B-0.195-0.0670.0990.272-7.9673.322
111A_G12:C30_B-0.339-0.1030.178-2.297-14.3752.354
113A_G14:C28_B-0.352-0.0490.139-6.608-17.0154.3
114A_G17:C26_B-0.205-0.026-0.3661.664-6.3661.066
117A_G20:C23_B-0.023-0.220.047-1.278-4.034-3.959
14A_U4:U39_B2.049-1.730.284-4.921-5.7445.972
112A_U13:A29_B-0.069-0.1850.367-5.095-14.7064.32
115A_U18:U25_B-2.252-1.6650.326-2.756-5.6696.437

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.