2BE0: Base Pair Morphology Step Parameters

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NDB ID: DR0019 PDB ID: 2BE0

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	AA_A8C9:G33U34_BB	-0.29	-1.516	3.116	1.992	7.016	34.173	-3.487	0.756	2.74	11.772	-3.342	34.92
1	2	AA_C2G3:C40G41_BB	0.686	-2.065	3.234	0.991	10.252	31.86	-5.109	-1.046	2.488	18.094	-1.748	33.443
1	5	AA_C5C7:G35G38_BB	1.817	-3.425	6.016	-12.306	21.718	76.773	-3.638	-1.966	4.784	17.07	9.672	80.13
1	6	AA_C7A8:U34G35_BB	0.194	-1.706	3.006	-1.722	12.344	32.378	-4.437	-0.544	2.214	21.183	2.955	34.634
1	8	AA_C9C10:G32G33_BB	-0.1	-1.618	3.268	0.299	5.064	32.162	-3.736	0.229	2.984	9.071	-0.535	32.549
1	9	AA_C10G11:C31G32_BB	0.068	-1.789	3.252	0.848	5.258	25.448	-5.338	0.069	2.831	11.773	-1.9	25.99
1	16	AA_C19G20:C23G24_BB	-0.497	-2.147	3.388	-2.138	14.886	31.129	-5.701	0.54	2.193	25.928	3.723	34.491
1	1	AA_G1C2:G41C42_BB	-0.179	-1.56	3.229	-2.406	0.887	29.379	-3.251	-0.151	3.186	1.744	4.733	29.488
1	3	AA_G3U4:U39C40_BB	0.389	-1.413	3.328	-1.394	-0.133	39.424	-2.077	-0.743	3.317	-0.197	2.066	39.448
1	10	AA_G11G12:C30C31_BB	0.288	-1.623	3.213	-1.058	5.675	33.225	-3.666	-0.658	2.894	9.832	1.833	33.709
1	11	AA_G12U13:A29C30_BB	0.33	-1.381	3.133	-1.717	7.798	35.104	-3.249	-0.757	2.755	12.725	2.802	35.973
1	13	AA_G14G17:C26C28_BB	-1.746	-3.429	6.217	13.412	23.474	76.103	-3.758	1.981	4.857	18.5	-10.57	80.072
1	14	AA_G17U18:U25C26_BB	0.365	-2.783	3.308	-7.696	0.36	27.05	-5.814	-2.544	3.053	0.75	16.046	28.106
1	17	AA_G20C21:G22C23_BB	0.331	-1.625	3.255	0.963	0.607	28.71	-3.411	-0.452	3.23	1.224	-1.942	28.732
1	4	AA_U4C5:G38U39_BB	-0.303	-2.72	3.203	5.141	-0.886	26.825	-5.543	1.901	3.177	-1.886	-10.951	27.318
1	12	AA_U13G14:C28A29_BB	-0.299	-1.751	2.949	1.946	11.053	31.869	-4.475	0.772	2.214	19.393	-3.414	33.74
1	15	AA_U18C19:G24U25_BB	-0.388	-1.264	3.035	5.132	-3.866	40.192	-1.416	1.093	3.069	-5.583	-7.41	40.681

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.