2BH2: Base Pair Morphology Parameters

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As of 23-Nov-2022 number of released structures: 12471

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NDB ID: PR0251 PDB ID: 2BH2

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_C1947:G1959_C	0.74	0.061	-0.02	4.322	-1.363	2.921
1	1	C_G1935:A1938_C	3.414	3.95	1.179	24.297	-38.909	97.428
1	2	C_G1945:C1961_C	-0.875	-0.137	0.374	3.07	-11.072	4.984
1	5	C_G1948:C1958_C	-0.113	-0.168	-0.327	-7.646	-8.769	-2.999
1	6	C_G1949:C1957_C	-0.309	-0.384	-0.317	-11.892	-12.558	0.365
1	3	C_U1946:A1960_C	-0.016	0.131	0.483	-7.551	-6.451	3.471
1	10	D_C1947:G1959_D	0.268	0.063	-0.162	8.688	-12.191	-2.468
1	7	D_G1935:A1938_D	3.428	3.901	1.28	23.206	-34.997	96.72
1	8	D_G1945:C1961_D	-1.28	-0.234	-0.528	-5.132	-23.879	-0.555
1	11	D_G1948:C1958_D	-0.161	-0.287	0.063	-0.526	-9.823	-3.269
1	12	D_G1949:C1957_D	-0.56	-0.19	0.175	-16.184	-12.26	-1.219
1	9	D_U1946:A1960_D	0.603	0.084	0.528	-6.562	-17.21	5.167

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.