2BJ6: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: AH0020 PDB ID: 2BJ6

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_6HA5:U6_E	0.347	-0.134	-0.273	4.945	-2.063	2.579
1	6	A_6HA6:U5_E	-0.249	-0.074	-0.131	-5.913	-11.268	8.644
1	1	A_6HC1:G10_E	-0.104	-0.203	0.082	4.226	-0.666	2.624
1	2	A_6HC2:G9_E	-0.017	-0.004	-0.066	6.505	-3.722	2.967
1	9	A_6HC9:G2_E	0.089	-0.244	-0.093	1.134	-6.714	-0.278
1	10	A_6HC10:G1_E	0.139	-0.131	0.089	-1.872	-0.205	-0.48
1	3	A_6HG3:C8_E	-0.486	-0.321	-0.102	-2.989	-2.109	0.047
1	8	A_6HG8:C3_E	-0.518	-0.23	-0.219	-1.269	-1.865	1.769
1	4	A_6HT4:A7_E	-0.277	-0.155	0.136	5.279	-4.444	-6.155
1	7	A_6HT7:A4_E	-0.409	-0.018	-0.068	0.062	-4.255	4.047
1	25	B_6HA5:U6_F	-0.102	-0.059	0.139	4.065	-12.377	4.479
1	26	B_6HA6:U5_F	0.168	0.011	-0.462	-4.732	-4.892	9.105
1	21	B_6HC1:G10_F	0.041	-0.125	0.336	5.719	-16.311	-4.074
1	22	B_6HC2:G9_F	-0.003	-0.198	-0.149	11.411	-11.32	2.138
1	29	B_6HC9:G2_F	0.036	-0.44	0.313	-10.029	0.987	-2.901
1	30	B_6HC10:G1_F	1.079	-0.58	0.284	-7.082	9.856	3.97
1	23	B_6HG3:C8_F	0.041	-0.075	-0.082	-1.478	-7.357	3.415
1	28	B_6HG8:C3_F	-0.27	-0.301	-0.354	-2.964	-2.513	1.376
1	24	B_6HT4:A7_F	-0.477	-0.159	-0.308	6.056	-14.478	1.003
1	27	B_6HT7:A4_F	-0.282	0.02	0.13	3.196	-4.061	5.328
1	35	D_6HA5:U6_H	-0.045	-0.126	0.33	4.008	0.755	1.443
1	36	D_6HA6:U5_H	-0.482	0.019	0.689	7.673	0.627	14.29
1	31	D_6HC1:G10_H	-0.04	-0.309	0.149	5.892	-6.166	-2.142
1	32	D_6HC2:G9_H	-0.377	-0.2	-0.272	4.269	-6.593	-0.125
1	39	D_6HC9:G2_H	-0.508	-0.069	-0.795	10.524	-8.845	-2.415
1	40	D_6HC10:G1_H	-0.685	-0.326	0.336	2.326	1.648	-1.158
1	33	D_6HG3:C8_H	-0.463	-0.036	0.14	-0.399	-9.137	1.846
1	38	D_6HG8:C3_H	-0.387	0.123	-0.248	-2.08	-9.838	2.17
1	34	D_6HT4:A7_H	-0.186	0.1	0.237	-1.893	-6.802	-7.303
1	37	D_6HT7:A4_H	-0.674	0.032	-0.582	11.294	-8.116	1.218
1	14	G_A4:6HT7_C	0.566	-0.228	0.054	-5.259	-1.759	-0.069
1	17	G_A7:6HT4_C	-0.277	-0.273	-0.229	-1.783	-9.406	4.422
1	13	G_C3:6HG8_C	0.276	-0.206	-0.133	0.526	-5.443	3.303
1	18	G_C8:6HG3_C	-0.397	-0.418	-0.044	2.53	-0.448	-2.858
1	11	G_G1:6HC10_C	-0.326	-0.111	0.239	3.188	2.978	1.896
1	12	G_G2:6HC9_C	-0.087	-0.143	-0.169	-0.438	-0.251	-1.654
1	19	G_G9:6HC2_C	-0.046	-0.245	0.004	-4.42	-11.91	-2.175
1	20	G_G10:6HC1_C	-0.157	-0.291	-0.064	-5.498	-5.336	-4.596
1	15	G_U5:6HA6_C	-0.121	-0.008	0.018	0.359	-2.054	4.84
1	16	G_U6:6HA5_C	-0.263	-0.153	0.244	4.324	-10.859	0.603

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.