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As of 18-May-2022 number of released structures: 12082
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NDB ID: AH0020  PDB ID: 2BJ6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15A_6HA5:U6_E0.347-0.134-0.2734.945-2.0632.579
16A_6HA6:U5_E-0.249-0.074-0.131-5.913-11.2688.644
11A_6HC1:G10_E-0.104-0.2030.0824.226-0.6662.624
12A_6HC2:G9_E-0.017-0.004-0.0666.505-3.7222.967
19A_6HC9:G2_E0.089-0.244-0.0931.134-6.714-0.278
110A_6HC10:G1_E0.139-0.1310.089-1.872-0.205-0.48
13A_6HG3:C8_E-0.486-0.321-0.102-2.989-2.1090.047
18A_6HG8:C3_E-0.518-0.23-0.219-1.269-1.8651.769
14A_6HT4:A7_E-0.277-0.1550.1365.279-4.444-6.155
17A_6HT7:A4_E-0.409-0.018-0.0680.062-4.2554.047
125B_6HA5:U6_F-0.102-0.0590.1394.065-12.3774.479
126B_6HA6:U5_F0.1680.011-0.462-4.732-4.8929.105
121B_6HC1:G10_F0.041-0.1250.3365.719-16.311-4.074
122B_6HC2:G9_F-0.003-0.198-0.14911.411-11.322.138
129B_6HC9:G2_F0.036-0.440.313-10.0290.987-2.901
130B_6HC10:G1_F1.079-0.580.284-7.0829.8563.97
123B_6HG3:C8_F0.041-0.075-0.082-1.478-7.3573.415
128B_6HG8:C3_F-0.27-0.301-0.354-2.964-2.5131.376
124B_6HT4:A7_F-0.477-0.159-0.3086.056-14.4781.003
127B_6HT7:A4_F-0.2820.020.133.196-4.0615.328
135D_6HA5:U6_H-0.045-0.1260.334.0080.7551.443
136D_6HA6:U5_H-0.4820.0190.6897.6730.62714.29
131D_6HC1:G10_H-0.04-0.3090.1495.892-6.166-2.142
132D_6HC2:G9_H-0.377-0.2-0.2724.269-6.593-0.125
139D_6HC9:G2_H-0.508-0.069-0.79510.524-8.845-2.415
140D_6HC10:G1_H-0.685-0.3260.3362.3261.648-1.158
133D_6HG3:C8_H-0.463-0.0360.14-0.399-9.1371.846
138D_6HG8:C3_H-0.3870.123-0.248-2.08-9.8382.17
134D_6HT4:A7_H-0.1860.10.237-1.893-6.802-7.303
137D_6HT7:A4_H-0.6740.032-0.58211.294-8.1161.218
114G_A4:6HT7_C0.566-0.2280.054-5.259-1.759-0.069
117G_A7:6HT4_C-0.277-0.273-0.229-1.783-9.4064.422
113G_C3:6HG8_C0.276-0.206-0.1330.526-5.4433.303
118G_C8:6HG3_C-0.397-0.418-0.0442.53-0.448-2.858
111G_G1:6HC10_C-0.326-0.1110.2393.1882.9781.896
112G_G2:6HC9_C-0.087-0.143-0.169-0.438-0.251-1.654
119G_G9:6HC2_C-0.046-0.2450.004-4.42-11.91-2.175
120G_G10:6HC1_C-0.157-0.291-0.064-5.498-5.336-4.596
115G_U5:6HA6_C-0.121-0.0080.0180.359-2.0544.84
116G_U6:6HA5_C-0.263-0.1530.2444.324-10.8590.603

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.