A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
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NDB ID: PD0836  PDB ID: 2BNW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17F_DA25:DT11_E0.053-0.1620.1950.585-10.6160.136
114F_DA32:DT4_E-0.149-0.281-0.032-1.443-16.904-2.078
11F_DC19:DG17_E-0.3930.0840.461-9.648-13.2912.644
117F_DC35:DG1_E0.321-0.237-0.0888.546-0.619-2.558
14F_DG22:DC14_E-0.303-0.1390.038-13.792-8.072-2.188
16F_DG24:DC12_E-0.174-0.2050.3128.49-14.235-0.218
111F_DG29:DC7_E-0.228-0.125-0.005-18.357-1.707-1.77
113F_DG31:DC5_E-0.255-0.1410.68918.002-9.515-1.24
12F_DT20:DA16_E-0.1270.097-0.1362.239-12.733.407
13F_DT21:DA15_E-0.015-0.112-0.2063.456-15.426.578
15F_DT23:DA13_E-0.347-0.109-0.05-6.0356.902-0.095
18F_DT26:DA10_E0.182-0.0740.152-1.086-12.7474.676
19F_DT27:DA9_E-0.071-0.1990.226-3.791-13.0564.762
110F_DT28:DA8_E-0.018-0.2370.306-3.626-11.2071.413
112F_DT30:DA6_E-0.05-0.1350.034-0.40110.346-0.297
115F_DT33:DA3_E-0.188-0.2070.248-0.962-12.480.637
116F_DT34:DA2_E-0.131-0.099-0.007-8.315-12.659-0.779
119G_DA2:DT34_H0.61-0.140.12310.875-12.663-11.875
120G_DA3:DT33_H-0.716-0.0630.0891.455-17.4615.339
123G_DA6:DT30_H-1.171-0.2710.0462.0855.9597.957
125G_DA8:DT28_H-0.541-0.2440.36713.666-10.4923.059
126G_DA9:DT27_H0.2750.0020.419.291-10.1611.241
127G_DA10:DT26_H-0.0450.440.4260.817-14.872-10.618
130G_DA13:DT23_H-0.72-0.296-0.266-5.712-1.239-2.975
132G_DA15:DT21_H-0.9380.3370.21916.127-12.71216.256
133G_DA16:DT20_H-0.21-0.149-0.29912.074-19.015-7.315
122G_DC5:DG31_H0.8360.6220.162-14.634-19.4354.204
124G_DC7:DG29_H1.061-0.244-0.10815.752-4.851-3.706
129G_DC12:DG24_H1.268-0.1530.389-13.157-13.2016.771
131G_DC14:DG22_H-0.5240.40.1155.414-3.7195.843
118G_DG1:DC35_H-0.249-0.224-0.394-2.845.154-0.53
134G_DG17:DC19_H0.335-0.0090.0279.72-17.169-7.322
121G_DT4:DA32_H0.1440.168-0.4285.54-18.9051.334
128G_DT11:DA25_H-0.5050.00.568-4.073-21.8787.952

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.