2BNW: Base Pair Morphology Step Parameters

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NDB ID: PD0836 PDB ID: 2BNW

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	FF_DA25DT26:DA10DT11_EE	0.258	-0.689	3.377	2.258	-4.217	33.156	-0.468	-0.059	3.445	-7.342	-3.931	33.489
1	14	FF_DA32DT33:DA3DT4_EE	0.283	-0.937	3.224	-3.037	-0.121	32.132	-1.664	-1.039	3.188	-0.218	5.472	32.271
1	1	FF_DC19DT20:DA16DG17_EE	-0.264	-0.166	3.031	6.068	3.472	35.775	-0.708	1.196	2.92	5.587	-9.763	36.43
1	17	FG_DC35DG1:DC35DG1_HE	0.288	-5.218	3.78	4.936	-9.15	-117.591	3.148	0.224	3.515	5.344	2.882	-117.876
1	4	FF_DG22DT23:DA13DC14_EE	0.663	-0.15	3.252	1.587	-1.912	32.244	0.069	-0.909	3.283	-3.435	-2.852	32.337
1	6	FF_DG24DA25:DT11DC12_EE	0.117	-0.366	3.351	0.203	-4.704	40.809	0.005	-0.144	3.372	-6.719	-0.29	41.068
1	11	FF_DG29DT30:DA6DC7_EE	0.282	0.023	2.998	-0.307	0.483	27.693	-0.059	-0.657	2.995	1.009	0.642	27.699
1	13	FF_DG31DA32:DT4DC5_EE	0.374	-0.546	3.715	7.164	-1.53	38.459	-0.605	0.431	3.74	-2.298	-10.756	39.125
1	2	FF_DT20DT21:DA15DA16_EE	0.303	-0.197	3.201	2.089	-0.841	34.759	-0.204	-0.194	3.217	-1.406	-3.492	34.83
1	3	FF_DT21DG22:DC14DA15_EE	-0.165	-0.778	3.607	-3.484	2.512	38.504	-1.51	-0.22	3.552	3.794	5.263	38.733
1	5	FF_DT23DG24:DC12DA13_EE	-0.93	1.071	3.315	-0.164	-8.326	37.819	2.62	1.385	3.025	-12.659	0.249	38.692
1	8	FF_DT26DT27:DA9DA10_EE	-0.159	-0.555	3.36	-1.037	-2.744	34.649	-0.496	0.102	3.396	-4.597	1.738	34.769
1	9	FF_DT27DT28:DA8DA9_EE	0.121	-0.086	3.235	-0.8	-6.944	40.762	0.616	-0.256	3.204	-9.882	1.138	41.332
1	10	FF_DT28DG29:DC7DA8_EE	-0.134	-0.493	3.622	1.641	0.247	39.357	-0.764	0.414	3.61	0.367	-2.436	39.39
1	12	FF_DT30DG31:DC5DA6_EE	-0.416	1.333	3.275	-1.243	-15.318	40.121	3.254	0.453	2.63	-21.402	1.737	42.85
1	15	FF_DT33DT34:DA2DA3_EE	-0.11	-0.707	3.425	2.734	-5.054	35.52	-0.381	0.592	3.472	-8.218	-4.446	35.967
1	16	FF_DT34DC35:DG1DA2_EE	0.283	0.001	3.155	-2.578	2.837	35.066	-0.402	-0.835	3.118	4.69	4.263	35.269
1	19	GG_DA2DA3:DT33DT34_HH	0.44	-0.463	3.36	1.213	-2.357	34.112	-0.402	-0.551	3.396	-4.011	-2.064	34.212
1	20	GG_DA3DT4:DA32DT33_HH	-0.281	-0.169	3.14	2.707	-1.551	37.106	-0.067	0.784	3.116	-2.432	-4.245	37.232
1	23	GG_DA6DC7:DG29DT30_HH	-0.068	0.223	3.059	0.92	-0.054	43.03	0.309	0.177	3.057	-0.073	-1.254	43.039
1	25	GG_DA8DA9:DT27DT28_HH	-0.284	0.225	3.353	-0.773	-3.836	42.663	0.7	0.311	3.326	-5.259	1.06	42.834
1	26	GG_DA9DA10:DT26DT27_HH	-0.424	-0.767	3.369	-2.641	-7.626	34.553	-0.073	0.286	3.476	-12.626	4.373	35.455
1	27	GG_DA10DT11:DA25DT26_HH	1.034	-0.53	3.293	3.251	0.735	35.541	-0.972	-1.208	3.361	1.2	-5.312	35.692
1	30	GG_DA13DC14:DG22DT23_HH	0.219	0.714	3.097	-4.178	-0.138	33.125	1.265	-1.035	3.044	-0.241	7.292	33.38
1	32	GG_DA15DA16:DT20DT21_HH	-1.751	1.079	3.29	0.732	-1.132	41.971	1.623	2.519	3.232	-1.58	-1.022	41.991
1	33	GG_DA16DG17:DC19DT20_HH	0.787	0.444	3.394	-5.368	-0.715	41.532	0.698	-1.675	3.265	-1.003	7.532	41.868
1	22	GG_DC5DA6:DT30DG31_HH	0.526	0.625	2.895	-0.8	4.708	26.216	0.247	-1.331	2.943	10.271	1.745	26.64
1	24	GG_DC7DA8:DT28DG29_HH	0.354	0.356	3.325	-1.476	-0.014	27.789	0.743	-1.095	3.302	-0.03	3.07	27.827
1	29	GG_DC12DA13:DT23DG24_HH	-0.369	-0.188	2.949	3.34	11.132	21.376	-3.542	1.805	2.463	27.542	-8.264	24.299
1	31	GG_DC14DA15:DT21DG22_HH	0.946	1.263	3.095	4.504	2.838	36.211	1.629	-0.901	3.272	4.536	-7.199	36.587
1	18	GG_DG1DA2:DT34DC35_HH	-1.251	0.2	3.159	-5.205	3.442	39.62	-0.098	1.235	3.296	5.039	7.622	40.089
1	21	GG_DT4DC5:DG31DA32_HH	0.002	-0.125	3.7	-3.569	-1.271	40.476	-0.02	-0.451	3.689	-1.832	5.145	40.646
1	28	GG_DT11DC12:DG24DA25_HH	0.143	-0.137	3.347	0.456	-2.049	46.223	0.004	-0.142	3.351	-2.608	-0.581	46.268

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.