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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0836
PDB ID:
2BNW
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
7
FF_DA25DT26:DA10DT11_EE
0.258
-0.689
3.377
2.258
-4.217
33.156
-0.468
-0.059
3.445
-7.342
-3.931
33.489
1
14
FF_DA32DT33:DA3DT4_EE
0.283
-0.937
3.224
-3.037
-0.121
32.132
-1.664
-1.039
3.188
-0.218
5.472
32.271
1
1
FF_DC19DT20:DA16DG17_EE
-0.264
-0.166
3.031
6.068
3.472
35.775
-0.708
1.196
2.92
5.587
-9.763
36.43
1
17
FG_DC35DG1:DC35DG1_HE
0.288
-5.218
3.78
4.936
-9.15
-117.591
3.148
0.224
3.515
5.344
2.882
-117.876
1
4
FF_DG22DT23:DA13DC14_EE
0.663
-0.15
3.252
1.587
-1.912
32.244
0.069
-0.909
3.283
-3.435
-2.852
32.337
1
6
FF_DG24DA25:DT11DC12_EE
0.117
-0.366
3.351
0.203
-4.704
40.809
0.005
-0.144
3.372
-6.719
-0.29
41.068
1
11
FF_DG29DT30:DA6DC7_EE
0.282
0.023
2.998
-0.307
0.483
27.693
-0.059
-0.657
2.995
1.009
0.642
27.699
1
13
FF_DG31DA32:DT4DC5_EE
0.374
-0.546
3.715
7.164
-1.53
38.459
-0.605
0.431
3.74
-2.298
-10.756
39.125
1
2
FF_DT20DT21:DA15DA16_EE
0.303
-0.197
3.201
2.089
-0.841
34.759
-0.204
-0.194
3.217
-1.406
-3.492
34.83
1
3
FF_DT21DG22:DC14DA15_EE
-0.165
-0.778
3.607
-3.484
2.512
38.504
-1.51
-0.22
3.552
3.794
5.263
38.733
1
5
FF_DT23DG24:DC12DA13_EE
-0.93
1.071
3.315
-0.164
-8.326
37.819
2.62
1.385
3.025
-12.659
0.249
38.692
1
8
FF_DT26DT27:DA9DA10_EE
-0.159
-0.555
3.36
-1.037
-2.744
34.649
-0.496
0.102
3.396
-4.597
1.738
34.769
1
9
FF_DT27DT28:DA8DA9_EE
0.121
-0.086
3.235
-0.8
-6.944
40.762
0.616
-0.256
3.204
-9.882
1.138
41.332
1
10
FF_DT28DG29:DC7DA8_EE
-0.134
-0.493
3.622
1.641
0.247
39.357
-0.764
0.414
3.61
0.367
-2.436
39.39
1
12
FF_DT30DG31:DC5DA6_EE
-0.416
1.333
3.275
-1.243
-15.318
40.121
3.254
0.453
2.63
-21.402
1.737
42.85
1
15
FF_DT33DT34:DA2DA3_EE
-0.11
-0.707
3.425
2.734
-5.054
35.52
-0.381
0.592
3.472
-8.218
-4.446
35.967
1
16
FF_DT34DC35:DG1DA2_EE
0.283
0.001
3.155
-2.578
2.837
35.066
-0.402
-0.835
3.118
4.69
4.263
35.269
1
19
GG_DA2DA3:DT33DT34_HH
0.44
-0.463
3.36
1.213
-2.357
34.112
-0.402
-0.551
3.396
-4.011
-2.064
34.212
1
20
GG_DA3DT4:DA32DT33_HH
-0.281
-0.169
3.14
2.707
-1.551
37.106
-0.067
0.784
3.116
-2.432
-4.245
37.232
1
23
GG_DA6DC7:DG29DT30_HH
-0.068
0.223
3.059
0.92
-0.054
43.03
0.309
0.177
3.057
-0.073
-1.254
43.039
1
25
GG_DA8DA9:DT27DT28_HH
-0.284
0.225
3.353
-0.773
-3.836
42.663
0.7
0.311
3.326
-5.259
1.06
42.834
1
26
GG_DA9DA10:DT26DT27_HH
-0.424
-0.767
3.369
-2.641
-7.626
34.553
-0.073
0.286
3.476
-12.626
4.373
35.455
1
27
GG_DA10DT11:DA25DT26_HH
1.034
-0.53
3.293
3.251
0.735
35.541
-0.972
-1.208
3.361
1.2
-5.312
35.692
1
30
GG_DA13DC14:DG22DT23_HH
0.219
0.714
3.097
-4.178
-0.138
33.125
1.265
-1.035
3.044
-0.241
7.292
33.38
1
32
GG_DA15DA16:DT20DT21_HH
-1.751
1.079
3.29
0.732
-1.132
41.971
1.623
2.519
3.232
-1.58
-1.022
41.991
1
33
GG_DA16DG17:DC19DT20_HH
0.787
0.444
3.394
-5.368
-0.715
41.532
0.698
-1.675
3.265
-1.003
7.532
41.868
1
22
GG_DC5DA6:DT30DG31_HH
0.526
0.625
2.895
-0.8
4.708
26.216
0.247
-1.331
2.943
10.271
1.745
26.64
1
24
GG_DC7DA8:DT28DG29_HH
0.354
0.356
3.325
-1.476
-0.014
27.789
0.743
-1.095
3.302
-0.03
3.07
27.827
1
29
GG_DC12DA13:DT23DG24_HH
-0.369
-0.188
2.949
3.34
11.132
21.376
-3.542
1.805
2.463
27.542
-8.264
24.299
1
31
GG_DC14DA15:DT21DG22_HH
0.946
1.263
3.095
4.504
2.838
36.211
1.629
-0.901
3.272
4.536
-7.199
36.587
1
18
GG_DG1DA2:DT34DC35_HH
-1.251
0.2
3.159
-5.205
3.442
39.62
-0.098
1.235
3.296
5.039
7.622
40.089
1
21
GG_DT4DC5:DG31DA32_HH
0.002
-0.125
3.7
-3.569
-1.271
40.476
-0.02
-0.451
3.689
-1.832
5.145
40.646
1
28
GG_DT11DC12:DG24DA25_HH
0.143
-0.137
3.347
0.456
-2.049
46.223
0.004
-0.142
3.351
-2.608
-0.581
46.268
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.