A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0246  PDB ID: 2BQ5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11R_A1:U19_R-2.23-0.453-0.1554.824-15.505-9.376
13R_A3:U17_R-0.337-0.1280.343-9.298-20.5643.081
12R_C2:G18_R-1.322-0.364-0.16814.938-23.388-9.621
15R_G5:C15_R0.0210.2340.1345.524-3.0897.442
16R_G7:C14_R-0.561-0.291-0.133-1.11-1.992-1.759
17R_G8:C13_R-0.901-0.161-0.04-4.505-2.1290.347
14R_U4:A16_R0.3320.2510.318-5.531-19.44516.57
18S_C2:G18_S-0.7260.130.066-10.97-6.976-10.003
110S_G5:C15_S-0.60.260.252-1.544-7.8143.561
111S_G7:C14_S0.9490.68-0.1580.568-9.7918.083
112S_G8:C13_S-1.0270.269-0.446-1.96413.929-5.44
19S_U4:A16_S-0.0550.1770.088-7.625-15.825-6.102

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.