2BQ5: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0246 PDB ID: 2BQ5

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	RR_A1C2:G18U19_RR	0.634	-1.044	3.032	-4.151	10.217	34.516	-2.936	-1.531	2.54	16.698	6.785	36.184
1	3	RR_A3U4:A16U17_RR	0.799	-0.743	3.056	4.039	5.768	37.716	-1.803	-0.746	2.981	8.829	-6.183	38.345
1	2	RR_C2A3:U17G18_RR	0.56	-1.693	3.728	-5.06	15.531	41.869	-3.701	-1.216	2.874	20.808	6.779	44.809
1	5	RR_G5G7:C14C15_RR	-0.284	-2.414	3.302	-0.049	3.771	27.815	-5.831	0.574	2.956	7.799	0.102	28.065
1	6	RR_G7G8:C13C14_RR	-0.327	-2.105	3.186	-2.908	7.394	31.649	-4.916	0.123	2.658	13.296	5.23	32.606
1	4	RR_U4G5:C15A16_RR	-0.304	-0.863	2.818	0.233	13.18	32.09	-3.101	0.541	2.295	22.684	-0.4	34.626
1	8	SS_G5G7:C14C15_SS	0.057	-1.679	3.139	-0.023	5.708	37.698	-3.238	-0.09	2.864	8.771	0.035	38.112
1	9	SS_G7G8:C13C14_SS	-1.112	-2.006	3.276	-1.49	6.552	27.127	-5.621	1.971	2.779	13.704	3.116	27.931
1	7	SS_U4G5:C15A16_SS	0.887	-1.309	2.944	1.743	10.643	31.816	-3.745	-1.294	2.437	18.753	-3.071	33.549

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.