A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0248  PDB ID: 2BS1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14R_C9:G13_R0.6410.1080.799-13.395-9.5921.768
12R_G7:C15_R1.344-0.256-0.32-13.988-17.08-8.74
11R_U6:A16_R-0.2440.512-0.0791.141-5.644-4.182
13R_U8:A14_R0.892-0.596-0.147-8.973-22.166-13.357
18S_C9:G13_S-0.0940.1810.336-12.352-8.99412.026
16S_G7:C15_S0.519-0.2440.774-4.347-14.622-3.484
15S_U6:A16_S-0.7610.049-0.1081.94115.474-3.377
17S_U8:A14_S0.594-0.6740.2-3.7-34.798-13.443

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.