2BS1: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0248 PDB ID: 2BS1

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	R_C9:G13_R	0.641	0.108	0.799	-13.395	-9.592	1.768
1	2	R_G7:C15_R	1.344	-0.256	-0.32	-13.988	-17.08	-8.74
1	1	R_U6:A16_R	-0.244	0.512	-0.079	1.141	-5.644	-4.182
1	3	R_U8:A14_R	0.892	-0.596	-0.147	-8.973	-22.166	-13.357
1	8	S_C9:G13_S	-0.094	0.181	0.336	-12.352	-8.994	12.026
1	6	S_G7:C15_S	0.519	-0.244	0.774	-4.347	-14.622	-3.484
1	5	S_U6:A16_S	-0.761	0.049	-0.108	1.941	15.474	-3.377
1	7	S_U8:A14_S	0.594	-0.674	0.2	-3.7	-34.798	-13.443

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.