A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0254  PDB ID: 2BYT 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
126B_A14:U8_B-4.133-1.9940.2923.7550.213-90.049
127B_A15:U48_B0.1821.57-0.2026.5670.763163.201
115B_A38:C32_B-0.955-0.081.35341.702-41.164-18.039
118B_A41:U29_B0.077-0.203-0.869-5.401-27.2011.459
12B_C2:G71_B0.086-0.057-0.78421.508-20.9360.604
13B_C3:G70_B0.205-0.066-0.63510.074-19.4872.853
123B_C11:G24_B0.253-0.134-0.005-5.717-11.5282.333
117B_C40:G30_B0.1350.038-0.3638.888-26.625-3.856
131B_C46:G47D_B0.0860.029-0.1384.6672.3761.681
19B_C50:G64_B0.19-0.067-0.2711.323-3.9413.226
11B_G1:C72_B0.071-0.077-0.339-6.899-21.164-3.269
14B_G4:C69_B-0.041-0.063-0.815-15.813-16.2642.419
15B_G5:C68_B0.0270.063-0.213-17.428-11.169-0.753
16B_G6:C67_B-0.17-0.1240.23-7.987-8.071-2.715
17B_G7:C66_B0.043-0.090.0441.836-5.18-2.487
122B_G10:C25_B-0.167-0.138-0.335-0.033-0.5391.071
124B_G12:C23_B-0.169-0.1350.063-5.873-6.771.16
125B_G13:A22_B6.973-4.4110.454-3.454-9.551-14.672
128B_G19:C56_B-0.2090.02-0.374-30.922-21.192-2.876
129B_G21:G47F_B-6.755-2.5441.02-15.737-29.973-42.02
120B_G43:C27_B-0.129-0.0310.148-13.624-15.372-0.837
130B_G45:C47E_B-0.21-0.144-0.22.638-0.031-0.66
18B_G49:C65_B-0.21-0.043-0.484-7.048-1.242.077
110B_G51:C63_B0.055-0.14-0.84-10.787-3.432-2.53
111B_G52:C62_B-0.166-0.09-0.917-13.389-11.953-1.594
112B_G53:C61_B0.1670.032-0.806-20.881-6.5490.273
116B_U39:A31_B-0.079-0.3391.07941.598-17.557-12.813
119B_U42:A28_B-0.08-0.128-0.413-3.158-22.3386.478
121B_U44:G26_B2.684-0.6520.257-4.356-6.14-4.256
113B_U54:A58_B4.328-1.608-0.068-7.32518.905-106.439
114B_U55:G18_B0.576-5.578-0.08530.576.547-100.683
157E_A14:U8_E-4.157-1.9980.2373.534-0.39-89.959
158E_A15:U48_E0.1991.607-0.0846.3931.837162.626
146E_A38:C32_E-0.96-0.0851.35841.591-40.955-18.076
149E_A41:U29_E0.081-0.194-0.858-5.345-27.0771.621
133E_C2:G71_E0.076-0.062-0.77321.41-20.7870.558
134E_C3:G70_E0.212-0.063-0.63410.266-19.2292.813
154E_C11:G24_E0.25-0.127-0.155-4.591-10.9132.64
148E_C40:G30_E0.1370.03-0.34338.571-26.446-3.922
162E_C46:G47D_E0.069-0.2950.0726.0783.987-3.246
140E_C50:G64_E0.2-0.052-0.2240.461-3.9583.412
132E_G1:C72_E0.074-0.076-0.338-6.503-21.185-3.26
135E_G4:C69_E-0.053-0.076-0.87-16.001-16.3162.534
136E_G5:C68_E0.0040.079-0.271-18.348-11.39-0.704
137E_G6:C67_E-0.172-0.1280.259-7.288-8.111-2.629
138E_G7:C66_E0.021-0.090.1512.686-4.983-2.413
153E_G10:C25_E-0.183-0.13-0.494-0.911-2.0081.126
155E_G12:C23_E-0.162-0.1270.207-4.071-7.590.894
156E_G13:A22_E6.984-4.3840.362-3.701-10.931-14.869
159E_G19:C56_E-0.202-0.02-0.307-29.455-20.536-3.058
160E_G21:G47F_E-6.725-2.3890.868-15.004-32.111-45.573
151E_G43:C27_E-0.145-0.0250.138-13.506-15.402-0.857
161E_G45:C47E_E-0.161-0.21-0.1410.881-5.486-2.218
163E_G47:A47C_E7.902-5.1540.6767.112-18.682-36.884
139E_G49:C65_E-0.2-0.039-0.453-7.223-0.4052.207
141E_G51:C63_E0.058-0.138-0.862-10.586-2.508-2.584
142E_G52:C62_E-0.17-0.081-0.918-13.949-11.683-1.496
143E_G53:C61_E0.1470.03-0.772-20.091-6.4770.456
147E_U39:A31_E-0.075-0.3381.08241.715-17.629-12.905
150E_U42:A28_E-0.113-0.127-0.397-3.827-22.9226.304
152E_U44:G26_E2.694-0.6510.26-4.644-6.957-3.905
144E_U54:A58_E4.313-1.587-0.127-6.75218.464-106.638
145E_U55:G18_E0.569-5.588-0.0730.1896.083-100.738

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.