2BYT: Base Pair Morphology Step Parameters

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NDB ID: PR0254 PDB ID: 2BYT

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	25	BB_A14A15:U48U8_BB	1.025	-2.722	3.4	7.539	10.77	-80.644	1.79	0.991	3.589	-8.272	5.79	-81.528
1	14	BB_A38U39:A31C32_BB	1.229	-1.396	4.399	-6.815	8.503	43.795	-2.801	-2.388	3.854	11.194	8.973	45.066
1	17	BB_A41U42:A28U29_BB	0.104	-0.951	3.461	-7.37	10.82	29.613	-3.64	-1.504	2.844	19.984	13.612	32.318
1	2	BB_C2C3:G70G71_BB	0.373	-1.02	3.814	-0.037	9.731	31.152	-3.716	-0.672	3.351	17.589	0.067	32.6
1	3	BB_C3G4:C69G70_BB	0.186	-1.509	3.949	2.61	20.928	30.757	-5.392	0.086	2.47	34.797	-4.339	37.149
1	22	BB_C11G12:C23G24_BB	-0.868	-1.823	3.338	1.91	6.031	25.888	-5.454	2.358	2.779	13.212	-4.184	26.637
1	16	BB_C40A41:U29G30_BB	-0.142	-1.237	4.564	4.147	31.14	35.646	-4.824	0.615	2.69	42.205	-5.621	47.173
1	9	BB_C50G51:C63G64_BB	-0.642	-1.507	3.512	1.577	16.725	28.22	-5.415	1.398	2.252	31.065	-2.929	32.754
1	1	BB_G1C2:G71C72_BB	-0.276	-1.244	2.891	-3.017	-2.373	32.913	-1.822	0.026	2.984	-4.171	5.302	33.13
1	4	BB_G4G5:C68C69_BB	0.318	-1.216	3.637	-1.848	4.015	29.941	-3.21	-1.014	3.423	7.719	3.553	30.258
1	5	BB_G5G6:C67C68_BB	0.897	-2.032	2.917	1.397	2.552	28.355	-4.635	-1.545	2.767	5.192	-2.841	28.501
1	6	BB_G6G7:C66C67_BB	-0.153	-1.694	3.035	4.967	2.065	34.252	-3.133	0.952	2.881	3.48	-8.369	34.659
1	7	BB_G7G49:C65C66_BB	0.73	-2.145	3.49	4.874	5.119	30.295	-5.013	-0.4	3.17	9.632	-9.169	31.089
1	21	BB_G10C11:G24C25_BB	-0.406	-2.299	3.524	-1.869	0.943	34.07	-4.076	0.374	3.477	1.607	3.187	34.133
1	23	BB_G12G13:A22C23_BB	0.744	-1.069	3.39	-1.207	3.094	60.02	-1.224	-0.804	3.322	3.091	1.206	60.103
1	24	BB_G13A14:U8A22_BB	0.02	-3.992	2.99	-6.567	-5.169	53.913	-4.055	-0.406	3.308	-5.663	7.195	54.509
1	26	BB_G21G45:C47EG47F_BB	2.935	-3.172	3.004	17.833	11.799	50.566	-4.145	-2.156	3.051	13.159	-19.889	54.626
1	19	BB_G43U44:G26C27_BB	-0.257	-1.421	3.168	-0.958	-0.711	42.434	-1.892	0.261	3.195	-0.982	1.323	42.45
1	27	BB_G45C46:G47DC47E_BB	-0.295	-2.179	3.357	-3.143	-1.046	33.677	-3.568	-0.02	3.434	-1.8	5.408	33.835
1	8	BB_G49C50:G64C65_BB	-0.761	-2.375	2.941	-2.603	2.814	32.691	-4.615	0.954	2.783	4.978	4.604	32.909
1	10	BB_G51G52:C62C63_BB	0.247	-1.617	3.544	-0.14	10.514	29.216	-5.052	-0.488	2.806	20.044	0.267	31.012
1	11	BB_G52G53:C61C62_BB	0.803	-1.992	3.798	-0.089	4.584	33.761	-4.218	-1.387	3.503	7.849	0.152	34.062
1	12	BB_G53U54:A58C61_BB	-2.515	-1.966	3.082	3.057	-5.003	85.108	-1.343	1.923	3.098	-3.695	-2.258	85.271
1	15	BB_U39C40:G30A31_BB	0.583	-1.517	4.076	12.406	8.652	30.65	-4.271	1.42	3.505	15.258	-21.876	34.098
1	18	BB_U42G43:C27A28_BB	-0.328	-1.541	3.549	-7.6	12.702	30.739	-4.68	-0.666	2.724	22.404	13.406	34.04
1	20	BB_U44G10:C25G26_BB	-3.951	-0.659	3.076	4.247	9.372	55.237	-1.173	4.414	2.655	10.011	-4.536	56.113
1	13	BB_U54U55:G18A58_BB	2.304	-1.983	3.3	11.467	8.201	42.256	-3.416	-1.936	3.364	11.014	-15.401	44.443
1	52	EE_A14A15:U48U8_EE	1.018	-2.804	3.281	7.498	10.11	-80.013	1.891	0.987	3.466	-7.818	5.799	-80.833
1	41	EE_A38U39:A31C32_EE	1.233	-1.396	4.399	-6.647	8.387	43.807	-2.79	-2.376	3.865	11.045	8.755	45.033
1	44	EE_A41U42:A28U29_EE	0.076	-0.951	3.492	-7.505	10.935	29.524	-3.683	-1.492	2.867	20.221	13.878	32.305
1	29	EE_C2C3:G70G71_EE	0.385	-1.025	3.808	-0.148	9.661	31.237	-3.697	-0.713	3.348	17.427	0.267	32.661
1	30	EE_C3G4:C69G70_EE	0.189	-1.503	3.955	3.19	21.186	30.696	-5.394	0.162	2.457	35.158	-5.295	37.286
1	49	EE_C11G12:C23G24_EE	-0.801	-1.787	3.358	0.786	5.056	26.06	-5.186	1.946	2.939	11.076	-1.722	26.549
1	43	EE_C40A41:U29G30_EE	-0.144	-1.236	4.539	4.162	31.442	35.627	-4.802	0.611	2.652	42.508	-5.627	47.354
1	55	EE_C46G47:A47CG47D_EE	-4.479	-1.459	3.257	1.329	13.684	53.227	-2.346	4.936	2.73	14.992	-1.456	54.848
1	36	EE_C50G51:C63G64_EE	-0.656	-1.523	3.441	1.943	16.982	28.196	-5.378	1.466	2.152	31.467	-3.601	32.883
1	28	EE_G1C2:G71C72_EE	-0.275	-1.243	2.911	-2.88	-2.276	32.873	-1.835	0.041	3.0	-4.006	5.07	33.071
1	31	EE_G4G5:C68C69_EE	0.308	-1.195	3.665	-2.127	4.253	29.847	-3.235	-1.063	3.436	8.192	4.096	30.215
1	32	EE_G5G6:C67C68_EE	0.901	-2.034	2.867	0.923	2.4	28.423	-4.593	-1.647	2.717	4.875	-1.875	28.536
1	33	EE_G6G7:C66C67_EE	-0.151	-1.711	3.007	4.469	1.411	34.298	-3.074	0.877	2.894	2.379	-7.535	34.608
1	34	EE_G7G49:C65C66_EE	0.747	-2.18	3.483	5.525	4.863	30.346	-5.009	-0.302	3.187	9.121	-10.363	31.205
1	48	EE_G10C11:G24C25_EE	-0.374	-2.214	3.53	-1.972	0.844	34.217	-3.897	0.302	3.492	1.432	3.347	34.282
1	50	EE_G12G13:A22C23_EE	0.805	-1.122	3.394	0.237	3.61	59.608	-1.313	-0.796	3.33	3.628	-0.238	59.707
1	51	EE_G13A14:U8A22_EE	0.04	-4.03	2.953	-6.776	-4.475	53.912	-4.145	-0.434	3.226	-4.905	7.426	54.475
1	53	EE_G21G45:C47EG47F_EE	2.718	-3.188	3.258	16.839	12.516	50.225	-4.286	-1.928	3.138	14.062	-18.919	54.167
1	46	EE_G43U44:G26C27_EE	-0.271	-1.417	3.185	-1.223	-0.91	42.522	-1.863	0.253	3.22	-1.255	1.686	42.548
1	54	EE_G45C46:G47DC47E_EE	-0.395	-1.98	3.348	-5.262	-4.383	35.276	-2.542	-0.163	3.58	-7.15	8.583	35.914
1	35	EE_G49C50:G64C65_EE	-0.752	-2.387	2.977	-2.564	2.818	32.667	-4.645	0.939	2.817	4.989	4.54	32.883
1	37	EE_G51G52:C62C63_EE	0.234	-1.611	3.585	-0.499	10.442	29.276	-5.045	-0.534	2.852	19.877	0.95	31.048
1	38	EE_G52G53:C61C62_EE	0.795	-1.998	3.75	-0.244	4.308	33.666	-4.188	-1.405	3.47	7.401	0.419	33.934
1	39	EE_G53U54:A58C61_EE	-2.518	-1.966	3.099	3.423	-5.527	85.136	-1.331	1.932	3.114	-4.08	-2.527	85.337
1	42	EE_U39C40:G30A31_EE	0.595	-1.526	4.084	12.308	8.744	30.662	-4.307	1.384	3.511	15.418	-21.701	34.098
1	45	EE_U42G43:C27A28_EE	-0.341	-1.534	3.515	-7.946	12.784	30.685	-4.65	-0.683	2.689	22.535	14.007	34.098
1	47	EE_U44G10:C25G26_EE	-3.967	-0.628	3.089	5.288	9.882	55.017	-1.163	4.486	2.589	10.574	-5.659	56.06
1	40	EE_U54U55:G18A58_EE	2.327	-1.984	3.301	11.878	8.524	42.39	-3.424	-1.921	3.365	11.391	-15.871	44.73

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.