2C4Q: Base Pair Morphology Parameters

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As of 9-Feb-2023 number of released structures: 12635

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NDB ID: PR0203 PDB ID: 2C4Q

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	R_A3:U17_R	-0.017	-0.176	0.353	4.875	-15.547	-1.906
1	1	R_C2:G18_R	-1.414	-0.181	0.245	6.626	-13.734	-6.563
1	4	R_G5:C15_R	-0.224	-0.177	0.111	4.785	-5.323	-0.982
1	5	R_G7:C14_R	-0.556	-0.184	0.152	-2.805	-8.061	1.894
1	6	R_G8:C13_R	-0.566	-0.104	0.09	0.518	1.081	3.094
1	3	R_U4:A16_R	0.288	-0.214	0.189	-3.895	-13.555	2.951
1	8	S_A3:U17_S	-0.98	0.529	-0.225	-2.314	-17.064	1.875
1	7	S_C2:G18_S	-1.8	0.283	0.152	9.766	-24.101	-6.581
1	10	S_G5:C15_S	-0.671	-0.223	0.292	2.519	-4.724	-1.219
1	11	S_G7:C14_S	-0.254	0.567	-0.019	-2.937	-12.218	11.199
1	12	S_G8:C13_S	0.087	0.332	-0.416	-4.497	-4.292	-2.204
1	9	S_U4:A16_S	0.156	-0.027	-0.331	3.695	-18.119	1.941

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.