2C4Q: Base Pair Morphology Step Parameters

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NDB ID: PR0203 PDB ID: 2C4Q

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	RR_A3U4:A16U17_RR	-0.053	-1.156	3.508	2.03	8.477	36.787	-2.917	0.352	3.167	13.205	-3.162	37.771
1	1	RR_C2A3:U17G18_RR	0.115	-1.858	3.075	-4.04	9.216	38.483	-3.673	-0.581	2.557	13.698	6.005	39.728
1	4	RR_G5G7:C14C15_RR	0.204	-2.131	3.441	-1.688	4.057	31.177	-4.693	-0.695	3.131	7.501	3.121	31.478
1	5	RR_G7G8:C13C14_RR	-0.408	-2.001	3.127	-1.312	3.798	32.521	-4.152	0.514	2.895	6.749	2.332	32.762
1	3	RR_U4G5:C15A16_RR	-0.074	-1.353	3.037	1.472	10.704	29.974	-4.15	0.366	2.417	19.899	-2.737	31.82
1	7	SS_A3U4:A16U17_SS	-0.197	-1.036	3.289	2.414	3.761	37.673	-2.07	0.609	3.156	5.798	-3.722	37.928
1	6	SS_C2A3:U17G18_SS	0.524	-1.934	3.735	-6.268	7.767	35.596	-4.176	-1.732	3.125	12.407	10.013	36.925
1	9	SS_G5G7:C14C15_SS	0.696	-1.935	3.337	1.069	10.346	33.974	-4.599	-0.995	2.672	17.213	-1.779	35.486
1	10	SS_G7G8:C13C14_SS	-1.266	-1.522	3.071	-0.979	10.544	34.189	-3.816	1.939	2.54	17.424	1.617	35.745
1	8	SS_U4G5:C15A16_SS	0.382	-1.133	3.381	-0.457	10.172	30.125	-3.898	-0.779	2.851	18.903	0.849	31.761

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.