A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: PR0204  PDB ID: 2C4Y 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12R_A3:U17_R-0.195-0.1430.5395.114-17.7915.671
11R_C2:G18_R-1.0340.0460.2075.697-10.4386.536
14R_G5:C15_R-0.214-0.16-0.1123.948-7.11-0.619
15R_G7:C14_R-0.557-0.2060.02-3.841-7.8870.558
16R_G8:C13_R-1.067-0.0160.0462.8742.2282.874
13R_U4:A16_R0.325-0.0770.335-2.794-9.1356.931
18S_G5:C15_S-0.1030.279-0.235-5.216-12.467-2.323
19S_G7:C14_S-0.6070.582-0.19-7.548-7.0987.018
110S_G8:C13_S-0.0710.241-0.365-7.293-2.597-5.437
17S_U4:A16_S-0.3380.013-0.2271.476-16.941-6.614

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.