A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PR0209  PDB ID: 2C51 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11R_A3:U17_R0.009-0.0040.212-3.472-21.7632.482
13R_G5:C15_R-0.592-0.142-0.2962.173-8.4630.963
14R_G7:C14_R-1.417-0.4530.3352.658-3.5132.668
15R_G8:C13_R-1.2970.041-0.3321.8495.2883.645
12R_U4:A16_R-0.022-0.010.153-1.271-6.7789.303
17S_G5:C15_S-0.11-0.041-0.346-1.036-12.755-2.724
18S_G7:C14_S-1.2370.053-0.313-10.271-7.8045.483
19S_G8:C13_S-0.4310.178-0.2820.875-5.4091.561
16S_U4:A16_S-0.096-0.065-0.3670.159-3.4223.509

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.