2C51: Base Pair Morphology Step Parameters

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NDB ID: PR0209 PDB ID: 2C51

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	RR_A3U4:A16U17_RR	-0.119	-1.027	3.145	0.703	7.879	33.138	-2.917	0.307	2.83	13.574	-1.211	34.043
1	3	RR_G5G7:C14C15_RR	0.196	-2.156	3.227	-6.178	2.052	27.354	-4.902	-1.793	2.946	4.264	12.835	28.104
1	4	RR_G7G8:C13C14_RR	-0.076	-1.799	3.217	1.091	6.664	35.351	-3.8	0.268	2.839	10.852	-1.776	35.97
1	2	RR_U4G5:C15A16_RR	-0.113	-1.291	3.13	4.467	14.866	31.012	-4.172	0.792	2.258	25.872	-7.774	34.594
1	6	SS_G5G7:C14C15_SS	0.575	-1.879	3.386	-2.983	8.854	28.26	-5.411	-1.71	2.617	17.537	5.908	29.735
1	7	SS_G7G8:C13C14_SS	-0.791	-1.598	2.928	-1.459	8.193	38.442	-3.206	1.028	2.575	12.268	2.185	39.299
1	5	SS_U4G5:C15A16_SS	0.409	-1.287	3.38	3.525	17.647	33.08	-4.193	-0.198	2.44	28.521	-5.697	37.538

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.