2CAX: Base Pair Morphology Parameters

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As of 23-Nov-2022 number of released structures: 12471

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NDB ID: PD0939 PDB ID: 2CAX

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	H_DA27:DT12_G	0.575	0.032	0.337	3.08	-12.654	-5.134
1	13	H_DA34:DT5_G	-0.46	0.279	-0.184	-4.793	-19.222	-6.067
1	16	H_DC37:DG2_G	0.231	-0.162	-0.657	7.873	2.642	-8.561
1	3	H_DG24:DC15_G	0.87	0.627	0.031	-4.29	-4.881	-6.747
1	5	H_DG26:DC13_G	-1.299	-0.187	0.472	13.681	-7.12	-5.337
1	10	H_DG31:DC8_G	-1.319	-0.012	0.203	-6.728	-1.616	-1.853
1	12	H_DG33:DC6_G	-0.368	0.43	0.35	7.358	-13.862	-1.009
1	1	H_DT22:DA17_G	-0.159	-0.137	-0.246	-7.25	-8.495	-5.773
1	2	H_DT23:DA16_G	-0.442	-0.045	-0.801	3.628	-11.735	-1.167
1	4	H_DT25:DA14_G	0.437	-0.328	-0.432	5.025	-3.488	-5.662
1	7	H_DT28:DA11_G	1.741	-0.109	0.532	-2.753	-6.361	1.523
1	8	H_DT29:DA10_G	0.358	0.108	0.063	-8.458	1.26	2.642
1	9	H_DT30:DA9_G	-0.375	0.291	0.352	-3.347	-9.517	5.503
1	11	H_DT32:DA7_G	1.369	-0.114	0.053	4.429	7.644	-3.91
1	14	H_DT35:DA4_G	0.747	-0.047	0.393	-11.837	-8.913	3.726
1	15	H_DT36:DA3_G	-0.282	-0.065	0.373	-9.986	-6.656	-11.55
1	18	U_DA2:DT36_Y	0.223	-0.074	0.255	3.439	-1.878	-4.192
1	19	U_DA3:DT35_Y	0.557	-0.285	0.297	1.319	-6.26	-1.989
1	22	U_DA6:DT32_Y	0.011	-0.228	-0.261	4.322	9.201	-5.128
1	24	U_DA8:DT30_Y	0.137	-0.296	-0.1	1.058	-12.354	-0.746
1	25	U_DA9:DT29_Y	0.059	-0.197	0.292	3.883	-10.758	1.623
1	29	U_DA13:DT25_Y	0.534	-0.116	0.326	15.482	8.523	-5.907
1	31	U_DA15:DT23_Y	0.018	-0.159	-0.046	2.476	-14.054	4.607
1	32	U_DA16:DT22_Y	1.206	-0.108	-0.048	4.2	-11.002	-4.539
1	21	U_DC5:DG33_Y	0.504	-0.15	0.486	-11.711	-4.04	2.529
1	23	U_DC7:DG31_Y	-0.126	0.014	0.003	17.285	-3.585	1.459
1	28	U_DC12:DG26_Y	-0.352	-0.135	0.337	-8.731	-6.065	-1.253
1	30	U_DC14:DG24_Y	-0.108	-0.071	0.332	10.943	0.367	-5.865
1	17	U_DG1:DC37_Y	-0.248	-0.253	-0.207	-12.156	-4.775	-0.818
1	26	U_DG10:DC28_Y	-0.56	-0.193	-0.158	-6.014	-12.797	1.684
1	33	U_DG17:DC21_Y	0.121	-0.145	0.545	22.055	-11.807	-10.143
1	20	U_DT4:DA34_Y	0.147	-0.291	0.201	-1.396	-7.944	-4.688
1	27	U_DT11:DA27_Y	-0.006	-0.126	0.222	-6.691	-4.996	-0.992

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.