A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: PD0939  PDB ID: 2CAX 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16H_DA27:DT12_G0.5750.0320.3373.08-12.654-5.134
113H_DA34:DT5_G-0.460.279-0.184-4.793-19.222-6.067
116H_DC37:DG2_G0.231-0.162-0.6577.8732.642-8.561
13H_DG24:DC15_G0.870.6270.031-4.29-4.881-6.747
15H_DG26:DC13_G-1.299-0.1870.47213.681-7.12-5.337
110H_DG31:DC8_G-1.319-0.0120.203-6.728-1.616-1.853
112H_DG33:DC6_G-0.3680.430.357.358-13.862-1.009
11H_DT22:DA17_G-0.159-0.137-0.246-7.25-8.495-5.773
12H_DT23:DA16_G-0.442-0.045-0.8013.628-11.735-1.167
14H_DT25:DA14_G0.437-0.328-0.4325.025-3.488-5.662
17H_DT28:DA11_G1.741-0.1090.532-2.753-6.3611.523
18H_DT29:DA10_G0.3580.1080.063-8.4581.262.642
19H_DT30:DA9_G-0.3750.2910.352-3.347-9.5175.503
111H_DT32:DA7_G1.369-0.1140.0534.4297.644-3.91
114H_DT35:DA4_G0.747-0.0470.393-11.837-8.9133.726
115H_DT36:DA3_G-0.282-0.0650.373-9.986-6.656-11.55
118U_DA2:DT36_Y0.223-0.0740.2553.439-1.878-4.192
119U_DA3:DT35_Y0.557-0.2850.2971.319-6.26-1.989
122U_DA6:DT32_Y0.011-0.228-0.2614.3229.201-5.128
124U_DA8:DT30_Y0.137-0.296-0.11.058-12.354-0.746
125U_DA9:DT29_Y0.059-0.1970.2923.883-10.7581.623
129U_DA13:DT25_Y0.534-0.1160.32615.4828.523-5.907
131U_DA15:DT23_Y0.018-0.159-0.0462.476-14.0544.607
132U_DA16:DT22_Y1.206-0.108-0.0484.2-11.002-4.539
121U_DC5:DG33_Y0.504-0.150.486-11.711-4.042.529
123U_DC7:DG31_Y-0.1260.0140.00317.285-3.5851.459
128U_DC12:DG26_Y-0.352-0.1350.337-8.731-6.065-1.253
130U_DC14:DG24_Y-0.108-0.0710.33210.9430.367-5.865
117U_DG1:DC37_Y-0.248-0.253-0.207-12.156-4.775-0.818
126U_DG10:DC28_Y-0.56-0.193-0.158-6.014-12.7971.684
133U_DG17:DC21_Y0.121-0.1450.54522.055-11.807-10.143
120U_DT4:DA34_Y0.147-0.2910.201-1.396-7.944-4.688
127U_DT11:DA27_Y-0.006-0.1260.222-6.691-4.996-0.992

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.