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As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
PD0939
PDB ID:
2CAX
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
6
H_DA27:DT12_G
0.575
0.032
0.337
3.08
-12.654
-5.134
1
13
H_DA34:DT5_G
-0.46
0.279
-0.184
-4.793
-19.222
-6.067
1
16
H_DC37:DG2_G
0.231
-0.162
-0.657
7.873
2.642
-8.561
1
3
H_DG24:DC15_G
0.87
0.627
0.031
-4.29
-4.881
-6.747
1
5
H_DG26:DC13_G
-1.299
-0.187
0.472
13.681
-7.12
-5.337
1
10
H_DG31:DC8_G
-1.319
-0.012
0.203
-6.728
-1.616
-1.853
1
12
H_DG33:DC6_G
-0.368
0.43
0.35
7.358
-13.862
-1.009
1
1
H_DT22:DA17_G
-0.159
-0.137
-0.246
-7.25
-8.495
-5.773
1
2
H_DT23:DA16_G
-0.442
-0.045
-0.801
3.628
-11.735
-1.167
1
4
H_DT25:DA14_G
0.437
-0.328
-0.432
5.025
-3.488
-5.662
1
7
H_DT28:DA11_G
1.741
-0.109
0.532
-2.753
-6.361
1.523
1
8
H_DT29:DA10_G
0.358
0.108
0.063
-8.458
1.26
2.642
1
9
H_DT30:DA9_G
-0.375
0.291
0.352
-3.347
-9.517
5.503
1
11
H_DT32:DA7_G
1.369
-0.114
0.053
4.429
7.644
-3.91
1
14
H_DT35:DA4_G
0.747
-0.047
0.393
-11.837
-8.913
3.726
1
15
H_DT36:DA3_G
-0.282
-0.065
0.373
-9.986
-6.656
-11.55
1
18
U_DA2:DT36_Y
0.223
-0.074
0.255
3.439
-1.878
-4.192
1
19
U_DA3:DT35_Y
0.557
-0.285
0.297
1.319
-6.26
-1.989
1
22
U_DA6:DT32_Y
0.011
-0.228
-0.261
4.322
9.201
-5.128
1
24
U_DA8:DT30_Y
0.137
-0.296
-0.1
1.058
-12.354
-0.746
1
25
U_DA9:DT29_Y
0.059
-0.197
0.292
3.883
-10.758
1.623
1
29
U_DA13:DT25_Y
0.534
-0.116
0.326
15.482
8.523
-5.907
1
31
U_DA15:DT23_Y
0.018
-0.159
-0.046
2.476
-14.054
4.607
1
32
U_DA16:DT22_Y
1.206
-0.108
-0.048
4.2
-11.002
-4.539
1
21
U_DC5:DG33_Y
0.504
-0.15
0.486
-11.711
-4.04
2.529
1
23
U_DC7:DG31_Y
-0.126
0.014
0.003
17.285
-3.585
1.459
1
28
U_DC12:DG26_Y
-0.352
-0.135
0.337
-8.731
-6.065
-1.253
1
30
U_DC14:DG24_Y
-0.108
-0.071
0.332
10.943
0.367
-5.865
1
17
U_DG1:DC37_Y
-0.248
-0.253
-0.207
-12.156
-4.775
-0.818
1
26
U_DG10:DC28_Y
-0.56
-0.193
-0.158
-6.014
-12.797
1.684
1
33
U_DG17:DC21_Y
0.121
-0.145
0.545
22.055
-11.807
-10.143
1
20
U_DT4:DA34_Y
0.147
-0.291
0.201
-1.396
-7.944
-4.688
1
27
U_DT11:DA27_Y
-0.006
-0.126
0.222
-6.691
-4.996
-0.992
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.