2CAX: Base Pair Morphology Step Parameters

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As of 29-Jun-2022 number of released structures: 12153

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NDB ID: PD0939 PDB ID: 2CAX

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	HH_DA27DT28:DA11DT12_GG	0.645	-1.163	3.403	-0.52	0.161	41.347	-1.665	-0.971	3.391	0.228	0.736	41.35
1	13	HH_DA34DT35:DA4DT5_GG	0.585	-0.504	3.418	-2.585	-0.117	38.832	-0.742	-1.205	3.375	-0.176	3.883	38.915
1	16	HU_DC37DG1:DC37DG2_YG	0.292	-4.998	4.277	-7.524	-9.572	-119.587	3.002	0.077	4.037	5.531	-4.347	-119.963
1	3	HH_DG24DT25:DA14DC15_GG	-0.197	0.726	3.073	5.091	3.789	33.172	0.669	1.122	3.071	6.562	-8.817	33.757
1	5	HH_DG26DA27:DT12DC13_GG	-0.051	-0.578	3.488	-0.43	-2.089	39.912	-0.589	0.022	3.513	-3.057	0.63	39.967
1	10	HH_DG31DT32:DA7DC8_GG	-0.363	0.066	3.159	1.072	-2.948	40.486	0.412	0.639	3.137	-4.252	-1.546	40.602
1	12	HH_DG33DA34:DT5DC6_GG	-0.077	0.017	3.561	4.028	-5.323	38.904	0.708	0.63	3.504	-7.921	-5.994	39.451
1	1	HH_DT22DT23:DA16DA17_GG	0.745	0.835	2.881	7.163	0.155	32.664	1.428	-0.222	2.977	0.271	-12.549	33.42
1	2	HH_DT23DG24:DC15DA16_GG	-0.269	1.393	3.602	-8.324	5.187	45.813	1.266	-0.445	3.722	6.574	10.55	46.796
1	4	HH_DT25DG26:DC13DA14_GG	-0.117	-0.612	3.037	-6.618	7.802	23.551	-3.376	-1.431	2.638	18.063	15.321	25.649
1	7	HH_DT28DT29:DA10DA11_GG	0.272	-0.451	3.267	5.451	-3.093	32.164	-0.26	0.469	3.295	-5.517	-9.723	32.753
1	8	HH_DT29DT30:DA9DA10_GG	0.222	-0.144	3.107	-0.373	0.199	32.873	-0.286	-0.454	3.103	0.352	0.659	32.876
1	9	HH_DT30DG31:DC8DA9_GG	-0.538	0.679	3.265	-1.165	-0.079	37.029	1.079	0.69	3.278	-0.124	1.833	37.047
1	11	HH_DT32DG33:DC6DA7_GG	-0.389	0.186	3.213	-2.628	5.456	28.088	-0.844	0.197	3.213	11.079	5.335	28.721
1	14	HH_DT35DT36:DA3DA4_GG	-0.534	-0.636	3.084	0.157	-3.028	34.048	-0.628	0.932	3.125	-5.158	-0.267	34.179
1	15	HH_DT36DC37:DG2DA3_GG	0.834	0.182	2.885	9.664	-0.658	39.059	0.333	-0.212	2.997	-0.967	-14.19	40.197
1	18	UU_DA2DA3:DT35DT36_YY	0.047	-0.897	3.258	-1.006	-3.712	37.909	-0.9	-0.2	3.326	-5.695	1.543	38.097
1	19	UU_DA3DT4:DA34DT35_YY	-0.388	-1.077	3.363	0.09	-5.171	29.344	-0.954	0.775	3.495	-10.108	-0.176	29.786
1	22	UU_DA6DC7:DG31DT32_YY	-0.137	-0.049	3.107	-2.881	1.117	27.763	-0.355	-0.369	3.101	2.319	5.981	27.931
1	24	UU_DA8DA9:DT29DT30_YY	-0.098	-0.289	3.127	-3.727	-6.289	38.336	0.301	-0.287	3.13	-9.471	5.613	39.001
1	25	UU_DA9DG10:DC28DT29_YY	0.247	-0.766	3.636	1.908	-0.008	35.052	-1.269	-0.092	3.645	-0.013	-3.164	35.102
1	29	UU_DA13DC14:DG24DT25_YY	-0.557	-0.542	3.639	-1.634	-0.7	30.381	-0.876	0.695	3.674	-1.334	3.114	30.432
1	31	UU_DA15DA16:DT22DT23_YY	-0.59	-0.108	3.216	-1.896	-0.99	42.7	-0.051	0.622	3.24	-1.358	2.602	42.751
1	32	UU_DA16DG17:DC21DT22_YY	0.218	-0.629	2.852	-5.387	1.898	26.071	-1.789	-1.679	2.701	4.143	11.762	26.679
1	21	UU_DC5DA6:DT32DG33_YY	0.263	1.399	3.248	3.088	-10.435	37.327	3.302	-0.04	2.785	-15.895	-4.703	38.827
1	23	UU_DC7DA8:DT30DG31_YY	-0.243	-0.302	3.679	0.88	0.83	41.974	-0.519	0.442	3.667	1.159	-1.228	41.991
1	28	UU_DC12DA13:DT25DG26_YY	0.596	1.314	2.99	-1.301	-8.912	40.013	2.724	-0.975	2.631	-12.828	1.873	40.973
1	30	UU_DC14DA15:DT23DG24_YY	0.398	-0.646	3.328	4.02	0.019	39.471	-0.954	-0.106	3.35	0.028	-5.934	39.667
1	17	UU_DG1DA2:DT36DC37_YY	-0.656	-0.01	3.133	-0.877	1.666	37.104	-0.229	0.917	3.144	2.616	1.377	37.15
1	26	UU_DG10DT11:DA27DC28_YY	-0.595	-0.642	3.344	-3.609	-3.131	35.223	-0.576	0.426	3.428	-5.144	5.93	35.535
1	20	UU_DT4DC5:DG33DA34_YY	0.045	-0.427	3.468	-1.901	-2.997	40.429	-0.26	-0.29	3.484	-4.327	2.745	40.578
1	27	UU_DT11DC12:DG26DA27_YY	-0.14	-0.234	3.337	-0.278	-5.69	36.112	0.432	0.185	3.335	-9.109	0.445	36.544

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.