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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
PD0939
PDB ID:
2CAX
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
6
HH_DA27DT28:DA11DT12_GG
0.645
-1.163
3.403
-0.52
0.161
41.347
-1.665
-0.971
3.391
0.228
0.736
41.35
1
13
HH_DA34DT35:DA4DT5_GG
0.585
-0.504
3.418
-2.585
-0.117
38.832
-0.742
-1.205
3.375
-0.176
3.883
38.915
1
16
HU_DC37DG1:DC37DG2_YG
0.292
-4.998
4.277
-7.524
-9.572
-119.587
3.002
0.077
4.037
5.531
-4.347
-119.963
1
3
HH_DG24DT25:DA14DC15_GG
-0.197
0.726
3.073
5.091
3.789
33.172
0.669
1.122
3.071
6.562
-8.817
33.757
1
5
HH_DG26DA27:DT12DC13_GG
-0.051
-0.578
3.488
-0.43
-2.089
39.912
-0.589
0.022
3.513
-3.057
0.63
39.967
1
10
HH_DG31DT32:DA7DC8_GG
-0.363
0.066
3.159
1.072
-2.948
40.486
0.412
0.639
3.137
-4.252
-1.546
40.602
1
12
HH_DG33DA34:DT5DC6_GG
-0.077
0.017
3.561
4.028
-5.323
38.904
0.708
0.63
3.504
-7.921
-5.994
39.451
1
1
HH_DT22DT23:DA16DA17_GG
0.745
0.835
2.881
7.163
0.155
32.664
1.428
-0.222
2.977
0.271
-12.549
33.42
1
2
HH_DT23DG24:DC15DA16_GG
-0.269
1.393
3.602
-8.324
5.187
45.813
1.266
-0.445
3.722
6.574
10.55
46.796
1
4
HH_DT25DG26:DC13DA14_GG
-0.117
-0.612
3.037
-6.618
7.802
23.551
-3.376
-1.431
2.638
18.063
15.321
25.649
1
7
HH_DT28DT29:DA10DA11_GG
0.272
-0.451
3.267
5.451
-3.093
32.164
-0.26
0.469
3.295
-5.517
-9.723
32.753
1
8
HH_DT29DT30:DA9DA10_GG
0.222
-0.144
3.107
-0.373
0.199
32.873
-0.286
-0.454
3.103
0.352
0.659
32.876
1
9
HH_DT30DG31:DC8DA9_GG
-0.538
0.679
3.265
-1.165
-0.079
37.029
1.079
0.69
3.278
-0.124
1.833
37.047
1
11
HH_DT32DG33:DC6DA7_GG
-0.389
0.186
3.213
-2.628
5.456
28.088
-0.844
0.197
3.213
11.079
5.335
28.721
1
14
HH_DT35DT36:DA3DA4_GG
-0.534
-0.636
3.084
0.157
-3.028
34.048
-0.628
0.932
3.125
-5.158
-0.267
34.179
1
15
HH_DT36DC37:DG2DA3_GG
0.834
0.182
2.885
9.664
-0.658
39.059
0.333
-0.212
2.997
-0.967
-14.19
40.197
1
18
UU_DA2DA3:DT35DT36_YY
0.047
-0.897
3.258
-1.006
-3.712
37.909
-0.9
-0.2
3.326
-5.695
1.543
38.097
1
19
UU_DA3DT4:DA34DT35_YY
-0.388
-1.077
3.363
0.09
-5.171
29.344
-0.954
0.775
3.495
-10.108
-0.176
29.786
1
22
UU_DA6DC7:DG31DT32_YY
-0.137
-0.049
3.107
-2.881
1.117
27.763
-0.355
-0.369
3.101
2.319
5.981
27.931
1
24
UU_DA8DA9:DT29DT30_YY
-0.098
-0.289
3.127
-3.727
-6.289
38.336
0.301
-0.287
3.13
-9.471
5.613
39.001
1
25
UU_DA9DG10:DC28DT29_YY
0.247
-0.766
3.636
1.908
-0.008
35.052
-1.269
-0.092
3.645
-0.013
-3.164
35.102
1
29
UU_DA13DC14:DG24DT25_YY
-0.557
-0.542
3.639
-1.634
-0.7
30.381
-0.876
0.695
3.674
-1.334
3.114
30.432
1
31
UU_DA15DA16:DT22DT23_YY
-0.59
-0.108
3.216
-1.896
-0.99
42.7
-0.051
0.622
3.24
-1.358
2.602
42.751
1
32
UU_DA16DG17:DC21DT22_YY
0.218
-0.629
2.852
-5.387
1.898
26.071
-1.789
-1.679
2.701
4.143
11.762
26.679
1
21
UU_DC5DA6:DT32DG33_YY
0.263
1.399
3.248
3.088
-10.435
37.327
3.302
-0.04
2.785
-15.895
-4.703
38.827
1
23
UU_DC7DA8:DT30DG31_YY
-0.243
-0.302
3.679
0.88
0.83
41.974
-0.519
0.442
3.667
1.159
-1.228
41.991
1
28
UU_DC12DA13:DT25DG26_YY
0.596
1.314
2.99
-1.301
-8.912
40.013
2.724
-0.975
2.631
-12.828
1.873
40.973
1
30
UU_DC14DA15:DT23DG24_YY
0.398
-0.646
3.328
4.02
0.019
39.471
-0.954
-0.106
3.35
0.028
-5.934
39.667
1
17
UU_DG1DA2:DT36DC37_YY
-0.656
-0.01
3.133
-0.877
1.666
37.104
-0.229
0.917
3.144
2.616
1.377
37.15
1
26
UU_DG10DT11:DA27DC28_YY
-0.595
-0.642
3.344
-3.609
-3.131
35.223
-0.576
0.426
3.428
-5.144
5.93
35.535
1
20
UU_DT4DC5:DG33DA34_YY
0.045
-0.427
3.468
-1.901
-2.997
40.429
-0.26
-0.29
3.484
-4.327
2.745
40.578
1
27
UU_DT11DC12:DG26DA27_YY
-0.14
-0.234
3.337
-0.278
-5.69
36.112
0.432
0.185
3.335
-9.109
0.445
36.544
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.