2CD6: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 2CD6 PDB ID: 2CD6

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A3:U25_A	0.029	-0.097	0.662	21.529	-10.268	-7.513
1	4	A_A4:U24_A	-0.128	-0.029	0.222	26.899	-16.328	-2.693
1	7	A_C8:G21_A	0.166	-0.448	-1.112	9.066	-14.3	0.688
1	11	A_C12:G17_A	0.459	-0.208	-0.24	-10.95	5.615	-1.763
1	1	A_G1:C27_A	-0.078	-0.301	-0.312	48.989	12.056	-1.371
1	2	A_G2:C26_A	-0.354	-0.322	0.591	-4.557	-14.208	-5.594
1	5	A_G5:C23_A	-0.374	-0.293	-0.625	-14.242	-30.296	2.771
1	8	A_G9:C20_A	-0.184	-0.198	-0.234	-1.216	-14.562	-0.474
1	9	A_G10:C19_A	-0.356	-0.332	-0.572	-11.825	-32.576	3.315
1	6	A_U6:G22_A	2.353	-0.356	0.152	-8.435	-0.595	3.901
1	10	A_U11:A18_A	-0.153	-0.613	-1.31	-15.359	-12.667	-2.569
1	12	A_U13:G16_A	0.82	-5.362	-1.426	32.566	-17.023	-102.14

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.