A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 2CD6  PDB ID: 2CD6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U25_A0.029-0.0970.66221.529-10.268-7.513
14A_A4:U24_A-0.128-0.0290.22226.899-16.328-2.693
17A_C8:G21_A0.166-0.448-1.1129.066-14.30.688
111A_C12:G17_A0.459-0.208-0.24-10.955.615-1.763
11A_G1:C27_A-0.078-0.301-0.31248.98912.056-1.371
12A_G2:C26_A-0.354-0.3220.591-4.557-14.208-5.594
15A_G5:C23_A-0.374-0.293-0.625-14.242-30.2962.771
18A_G9:C20_A-0.184-0.198-0.234-1.216-14.562-0.474
19A_G10:C19_A-0.356-0.332-0.572-11.825-32.5763.315
16A_U6:G22_A2.353-0.3560.152-8.435-0.5953.901
110A_U11:A18_A-0.153-0.613-1.31-15.359-12.667-2.569
112A_U13:G16_A0.82-5.362-1.42632.566-17.023-102.14

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.