2CD6: Base Pair Morphology Step Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 2CD6 PDB ID: 2CD6

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_A3A4:U24U25_AA	1.297	-1.212	3.647	2.431	-5.21	32.592	-1.11	-1.802	3.872	-9.195	-4.289	33.081
1	4	AA_A4G5:C23U24_AA	0.529	-1.292	5.589	5.941	-0.354	31.94	-2.203	0.852	5.607	-0.636	-10.681	32.475
1	7	AA_C8G9:C20G21_AA	-0.072	-1.458	3.852	-3.453	10.423	34.133	-4.046	-0.437	3.273	17.214	5.702	35.806
1	11	AA_C12U13:G16G17_AA	1.698	-0.951	2.734	-3.202	3.574	108.306	-0.624	-1.08	2.677	2.204	1.974	108.379
1	1	AA_G1G2:C26C27_AA	-1.042	-0.89	6.161	-5.094	22.363	25.207	-8.091	0.289	4.181	41.843	9.531	33.954
1	2	AA_G2A3:U25C26_AA	-0.288	-1.165	2.465	-1.427	6.909	32.786	-2.838	0.33	2.191	12.067	2.492	33.516
1	5	AA_G5U6:G22C23_AA	0.498	-1.02	2.913	-5.018	15.515	39.623	-2.691	-1.102	2.299	21.803	7.051	42.722
1	8	AA_G9G10:C19C20_AA	0.508	-0.944	3.616	4.249	12.932	35.525	-3.217	-0.201	3.135	20.299	-6.67	37.965
1	9	AA_G10U11:A18C19_AA	-0.474	-1.367	3.457	-0.444	7.676	34.594	-3.392	0.712	3.098	12.715	0.735	35.412
1	6	AA_U6C8:G21G22_AA	0.445	-0.651	2.934	13.092	24.402	19.777	-4.474	1.037	1.434	48.583	-26.065	33.917
1	10	AA_U11C12:G17A18_AA	-0.749	-0.898	3.392	-5.312	18.034	28.337	-4.4	0.442	2.495	32.684	9.627	33.9

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.