A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785
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NDB ID: PDT049  PDB ID: 2CGP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14B_DA506:DT541_C0.069-0.208-0.692.955-12.4978.042
16B_DA508:DT539_C0.003-0.153-0.25612.745-13.3086.218
19B_DA511:DT536_C0.006-0.0660.129-11.458-11.2832.497
110B_DA512:DT535_C0.03-0.139-0.484-12.875-4.2276.308
13B_DC505:DG542_C0.165-0.133-0.473-10.144-7.1782.074
15B_DC507:DG540_C0.150.073-0.57434.164-2.28-1.562
11B_DG503:DC544_C-0.047-0.049-1.286-29.8331.71-1.939
12B_DT504:DA543_C-0.144-0.0540.067-16.909-15.3111.609
17B_DT509:DA538_C0.035-0.129-0.19712.608-14.2184.137
18B_DT510:DA537_C0.008-0.0840.212-0.574-9.446-0.632
111B_DT513:DA534_C0.165-0.192-0.91816.43-18.3947.889

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.