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As of 25-May-2022 number of released structures: 12098
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NDB ID:
PDT049
PDB ID:
2CGP
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
4
B_DA506:DT541_C
0.069
-0.208
-0.69
2.955
-12.497
8.042
1
6
B_DA508:DT539_C
0.003
-0.153
-0.256
12.745
-13.308
6.218
1
9
B_DA511:DT536_C
0.006
-0.066
0.129
-11.458
-11.283
2.497
1
10
B_DA512:DT535_C
0.03
-0.139
-0.484
-12.875
-4.227
6.308
1
3
B_DC505:DG542_C
0.165
-0.133
-0.473
-10.144
-7.178
2.074
1
5
B_DC507:DG540_C
0.15
0.073
-0.574
34.164
-2.28
-1.562
1
1
B_DG503:DC544_C
-0.047
-0.049
-1.286
-29.833
1.71
-1.939
1
2
B_DT504:DA543_C
-0.144
-0.054
0.067
-16.909
-15.311
1.609
1
7
B_DT509:DA538_C
0.035
-0.129
-0.197
12.608
-14.218
4.137
1
8
B_DT510:DA537_C
0.008
-0.084
0.212
-0.574
-9.446
-0.632
1
11
B_DT513:DA534_C
0.165
-0.192
-0.918
16.43
-18.394
7.889
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.