2CGP: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098

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NDB ID: PDT049 PDB ID: 2CGP

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	B_DA506:DT541_C	0.069	-0.208	-0.69	2.955	-12.497	8.042
1	6	B_DA508:DT539_C	0.003	-0.153	-0.256	12.745	-13.308	6.218
1	9	B_DA511:DT536_C	0.006	-0.066	0.129	-11.458	-11.283	2.497
1	10	B_DA512:DT535_C	0.03	-0.139	-0.484	-12.875	-4.227	6.308
1	3	B_DC505:DG542_C	0.165	-0.133	-0.473	-10.144	-7.178	2.074
1	5	B_DC507:DG540_C	0.15	0.073	-0.574	34.164	-2.28	-1.562
1	1	B_DG503:DC544_C	-0.047	-0.049	-1.286	-29.833	1.71	-1.939
1	2	B_DT504:DA543_C	-0.144	-0.054	0.067	-16.909	-15.311	1.609
1	7	B_DT509:DA538_C	0.035	-0.129	-0.197	12.608	-14.218	4.137
1	8	B_DT510:DA537_C	0.008	-0.084	0.212	-0.574	-9.446	-0.632
1	11	B_DT513:DA534_C	0.165	-0.192	-0.918	16.43	-18.394	7.889

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.