A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0163  PDB ID: 2CV0 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17C_A507:U566_C0.6360.098-0.109-4.701-9.002-5.816
126C_A514:U508_C-3.976-2.0630.9249.04716.256-94.19
115C_A538:C532_C-4.81-0.7661.43815.2427.2224.122
121C_A544:G526_C-0.1441.564-0.077-20.244-22.604-12.698
13C_C503:G570_C-0.014-0.0790.25813.485-13.119-3.928
14C_C504:G569_C0.1070.0660.2998.403-4.6460.002
15C_C505:G568_C0.163-0.095-0.15511.573-15.498-2.918
16C_C506:G567_C0.168-0.1460.3422.18-13.1050.786
124C_C512:G523_C0.025-0.090.18-6.038-6.7551.257
118C_C541:G529_C0.193-0.2790.015.486-8.4740.533
119C_C542:G528_C0.299-0.3380.037-0.262-10.0691.744
11C_G501:C572_C-0.151-0.260.1610.604-14.221-5.975
12C_G502:U571_C-2.402-0.5140.78217.414-7.437-4.887
122C_G510:C525_C-0.543-0.0390.2068.5542.140.905
127C_G515:C548_C-0.1123.416-0.4280.3894.313164.862
128C_G519:C556_C0.115-0.0250.66529.071-32.9052.618
116C_G539:C531_C-0.358-0.1360.3368.874-12.8912.441
117C_G540:C530_C-0.633-0.169-0.0433.323-9.966.594
120C_G543:C527_C0.055-0.059-0.149-18.595-22.4940.638
18C_G549:C565_C-0.7470.150.061-9.576-9.8884.678
19C_G550:C564_C-0.139-0.114-0.186-5.949-10.339-0.392
110C_G551:C563_C0.1170.129-0.117-2.3271.0855.413
111C_G552:C562_C-0.225-0.103-0.531-4.074-8.0544.649
112C_G553:C561_C0.1090.150.7683.1577.0072.249
123C_U511:A524_C-0.186-0.13-0.024-1.235-8.3416.507
125C_U513:G522_C2.306-0.453-0.1965.455-1.736.672
113C_U554:A558_C4.179-1.6170.861-0.2982.304-97.197
114C_U555:G518_C0.15-6.0620.81916.835-0.544-95.174
135D_A507:U566_D0.790.023-0.136-0.482-9.706-6.352
154D_A514:U508_D-4.03-1.9450.858.47514.11-96.057
143D_A538:C532_D-4.864-0.8261.35216.5750.0161.631
149D_A544:G526_D-0.2681.5470.02-19.318-19.486-13.55
131D_C503:G570_D-0.024-0.1180.05217.534-15.447-4.543
132D_C504:G569_D0.1630.03-0.0514.993-6.3890.71
133D_C505:G568_D0.139-0.138-0.0315.088-12.54-3.556
134D_C506:G567_D0.313-0.1130.2155.119-13.9871.335
152D_C512:G523_D0.141-0.1270.093-4.418-3.7451.012
146D_C541:G529_D0.179-0.3250.0244.52-13.1940.386
147D_C542:G528_D0.194-0.317-0.0730.232-12.3133.273
129D_G501:C572_D-0.073-0.2330.3355.353-14.483-5.653
130D_G502:U571_D-2.375-0.5250.90117.518-7.423-5.778
150D_G510:C525_D-0.562-0.0440.1498.4232.1671.145
155D_G515:C548_D-0.1653.792-0.3550.89-0.624162.994
156D_G519:C556_D-0.0750.5070.66234.258-35.790.765
144D_G539:C531_D-0.381-0.170.38.521-12.7691.612
145D_G540:C530_D-0.583-0.1720.1832.71-11.216.95
148D_G543:C527_D-0.068-0.1290.155-14.654-21.0351.67
136D_G549:C565_D-0.7950.1510.237-4.37-11.5484.095
137D_G550:C564_D-0.088-0.119-0.195-3.208-9.127-0.24
138D_G551:C563_D0.1950.135-0.115-1.0551.8044.699
139D_G552:C562_D-0.137-0.089-0.499-2.875-7.0433.944
140D_G553:C561_D0.1020.1850.5271.427.5192.397
151D_U511:A524_D-0.174-0.1180.155-0.1-8.5957.747
153D_U513:G522_D2.262-0.485-0.0374.9-3.5266.518
141D_U554:A558_D4.172-1.6420.933-0.1433.257-96.971
142D_U555:G518_D0.228-6.5460.86316.7291.767-96.462

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.