2CV0: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0163 PDB ID: 2CV0

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	C_A507:U566_C	0.636	0.098	-0.109	-4.701	-9.002	-5.816
1	26	C_A514:U508_C	-3.976	-2.063	0.924	9.047	16.256	-94.19
1	15	C_A538:C532_C	-4.81	-0.766	1.438	15.242	7.222	4.122
1	21	C_A544:G526_C	-0.144	1.564	-0.077	-20.244	-22.604	-12.698
1	3	C_C503:G570_C	-0.014	-0.079	0.258	13.485	-13.119	-3.928
1	4	C_C504:G569_C	0.107	0.066	0.299	8.403	-4.646	0.002
1	5	C_C505:G568_C	0.163	-0.095	-0.155	11.573	-15.498	-2.918
1	6	C_C506:G567_C	0.168	-0.146	0.342	2.18	-13.105	0.786
1	24	C_C512:G523_C	0.025	-0.09	0.18	-6.038	-6.755	1.257
1	18	C_C541:G529_C	0.193	-0.279	0.01	5.486	-8.474	0.533
1	19	C_C542:G528_C	0.299	-0.338	0.037	-0.262	-10.069	1.744
1	1	C_G501:C572_C	-0.151	-0.26	0.161	0.604	-14.221	-5.975
1	2	C_G502:U571_C	-2.402	-0.514	0.782	17.414	-7.437	-4.887
1	22	C_G510:C525_C	-0.543	-0.039	0.206	8.554	2.14	0.905
1	27	C_G515:C548_C	-0.112	3.416	-0.428	0.389	4.313	164.862
1	28	C_G519:C556_C	0.115	-0.025	0.665	29.071	-32.905	2.618
1	16	C_G539:C531_C	-0.358	-0.136	0.336	8.874	-12.891	2.441
1	17	C_G540:C530_C	-0.633	-0.169	-0.043	3.323	-9.96	6.594
1	20	C_G543:C527_C	0.055	-0.059	-0.149	-18.595	-22.494	0.638
1	8	C_G549:C565_C	-0.747	0.15	0.061	-9.576	-9.888	4.678
1	9	C_G550:C564_C	-0.139	-0.114	-0.186	-5.949	-10.339	-0.392
1	10	C_G551:C563_C	0.117	0.129	-0.117	-2.327	1.085	5.413
1	11	C_G552:C562_C	-0.225	-0.103	-0.531	-4.074	-8.054	4.649
1	12	C_G553:C561_C	0.109	0.15	0.768	3.157	7.007	2.249
1	23	C_U511:A524_C	-0.186	-0.13	-0.024	-1.235	-8.341	6.507
1	25	C_U513:G522_C	2.306	-0.453	-0.196	5.455	-1.73	6.672
1	13	C_U554:A558_C	4.179	-1.617	0.861	-0.298	2.304	-97.197
1	14	C_U555:G518_C	0.15	-6.062	0.819	16.835	-0.544	-95.174
1	35	D_A507:U566_D	0.79	0.023	-0.136	-0.482	-9.706	-6.352
1	54	D_A514:U508_D	-4.03	-1.945	0.85	8.475	14.11	-96.057
1	43	D_A538:C532_D	-4.864	-0.826	1.352	16.575	0.016	1.631
1	49	D_A544:G526_D	-0.268	1.547	0.02	-19.318	-19.486	-13.55
1	31	D_C503:G570_D	-0.024	-0.118	0.052	17.534	-15.447	-4.543
1	32	D_C504:G569_D	0.163	0.03	-0.05	14.993	-6.389	0.71
1	33	D_C505:G568_D	0.139	-0.138	-0.03	15.088	-12.54	-3.556
1	34	D_C506:G567_D	0.313	-0.113	0.215	5.119	-13.987	1.335
1	52	D_C512:G523_D	0.141	-0.127	0.093	-4.418	-3.745	1.012
1	46	D_C541:G529_D	0.179	-0.325	0.024	4.52	-13.194	0.386
1	47	D_C542:G528_D	0.194	-0.317	-0.073	0.232	-12.313	3.273
1	29	D_G501:C572_D	-0.073	-0.233	0.335	5.353	-14.483	-5.653
1	30	D_G502:U571_D	-2.375	-0.525	0.901	17.518	-7.423	-5.778
1	50	D_G510:C525_D	-0.562	-0.044	0.149	8.423	2.167	1.145
1	55	D_G515:C548_D	-0.165	3.792	-0.355	0.89	-0.624	162.994
1	56	D_G519:C556_D	-0.075	0.507	0.662	34.258	-35.79	0.765
1	44	D_G539:C531_D	-0.381	-0.17	0.3	8.521	-12.769	1.612
1	45	D_G540:C530_D	-0.583	-0.172	0.183	2.71	-11.21	6.95
1	48	D_G543:C527_D	-0.068	-0.129	0.155	-14.654	-21.035	1.67
1	36	D_G549:C565_D	-0.795	0.151	0.237	-4.37	-11.548	4.095
1	37	D_G550:C564_D	-0.088	-0.119	-0.195	-3.208	-9.127	-0.24
1	38	D_G551:C563_D	0.195	0.135	-0.115	-1.055	1.804	4.699
1	39	D_G552:C562_D	-0.137	-0.089	-0.499	-2.875	-7.043	3.944
1	40	D_G553:C561_D	0.102	0.185	0.527	1.42	7.519	2.397
1	51	D_U511:A524_D	-0.174	-0.118	0.155	-0.1	-8.595	7.747
1	53	D_U513:G522_D	2.262	-0.485	-0.037	4.9	-3.526	6.518
1	41	D_U554:A558_D	4.172	-1.642	0.933	-0.143	3.257	-96.971
1	42	D_U555:G518_D	0.228	-6.546	0.863	16.729	1.767	-96.462

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.