2CV0: Base Pair Morphology Step Parameters

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NDB ID: PR0163 PDB ID: 2CV0

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	CC_A507G549:C565U566_CC	-2.037	-1.007	3.351	-7.02	-3.066	47.101	-0.981	1.914	3.656	-3.807	8.716	47.685
1	25	CC_A514G515:C548U508_CC	1.972	-2.606	3.608	3.152	17.656	-78.838	1.474	1.622	3.959	-13.739	2.453	-80.527
1	14	CC_A538G539:C531C532_CC	-0.096	-1.152	3.52	1.824	10.756	48.315	-2.207	0.256	3.205	12.95	-2.196	49.459
1	20	CC_A544G510:C525G526_CC	-3.012	-2.211	3.201	14.531	13.673	57.498	-2.73	3.557	1.936	13.766	-14.63	60.581
1	3	CC_C503C504:G569G570_CC	0.375	-1.862	3.369	0.055	2.15	32.816	-3.662	-0.654	3.245	3.801	-0.097	32.884
1	4	CC_C504C505:G568G569_CC	-0.404	-1.786	3.013	5.341	3.043	31.358	-3.734	1.592	2.728	5.562	-9.763	31.94
1	5	CC_C505C506:G567G568_CC	0.3	-1.823	3.257	-2.477	9.037	31.232	-4.694	-0.93	2.61	16.331	4.476	32.574
1	6	CC_C506A507:U566G567_CC	-0.95	-1.281	3.329	5.104	14.662	35.292	-3.637	2.032	2.47	22.867	-7.96	38.456
1	23	CC_C512U513:G522G523_CC	1.544	-2.202	2.944	3.604	4.447	27.92	-5.366	-2.413	2.741	9.095	-7.371	28.489
1	17	CC_C541C542:G528G529_CC	0.232	-1.788	3.256	2.057	6.36	32.598	-4.13	-0.08	2.874	11.183	-3.617	33.258
1	18	CC_C542G543:C527G528_CC	0.24	-2.014	3.624	4.836	15.342	30.145	-5.817	0.341	2.364	27.201	-8.574	34.08
1	1	CC_G501G502:U571C572_CC	-0.311	-1.428	2.562	-8.627	4.675	29.477	-3.356	-0.688	2.311	8.882	16.393	31.033
1	2	CC_G502C503:G570U571_CC	0.084	-1.151	3.321	2.254	5.503	43.633	-2.052	0.1	3.161	7.362	-3.016	44.016
1	21	CC_G510U511:A524C525_CC	0.324	-1.891	3.504	0.761	6.048	36.36	-3.834	-0.406	3.166	9.609	-1.209	36.85
1	15	CC_G539G540:C530C531_CC	0.125	-1.663	3.356	-0.288	7.041	31.714	-4.176	-0.272	2.928	12.688	0.518	32.467
1	16	CC_G540C541:G529C530_CC	-0.165	-1.545	3.223	-1.856	3.379	35.58	-2.985	0.011	3.073	5.51	3.026	35.782
1	19	CC_G543A544:G526C527_CC	-1.054	-1.363	3.087	1.309	3.845	35.063	-2.77	1.915	2.886	6.355	-2.163	35.29
1	8	CC_G549G550:C564C565_CC	-0.723	-1.941	3.139	1.487	2.527	34.004	-3.681	1.452	2.958	4.31	-2.536	34.127
1	9	CC_G550G551:C563C564_CC	0.342	-1.399	3.033	-0.641	3.024	30.672	-3.167	-0.756	2.877	5.699	1.208	30.823
1	10	CC_G551G552:C562C563_CC	0.43	-1.776	3.293	5.055	9.593	28.225	-5.227	0.133	2.6	18.815	-9.915	30.197
1	11	CC_G552G553:C561C562_CC	0.748	-2.116	2.768	-8.634	3.147	32.882	-4.002	-2.357	2.297	5.429	14.894	34.108
1	12	CC_G553U554:A558C561_CC	-1.91	-3.019	3.431	0.339	0.661	93.652	-2.082	1.316	3.41	0.453	-0.232	93.654
1	22	CC_U511C512:G523A524_CC	-0.59	-1.71	3.288	0.237	9.841	34.744	-4.067	0.985	2.715	16.085	-0.388	36.07
1	24	CC_U513A514:U508G522_CC	-1.021	-0.89	3.121	-0.777	-2.92	66.328	-0.701	0.903	3.163	-2.667	0.709	66.389
1	13	CC_U554U555:G518A558_CC	1.962	-1.522	3.135	7.852	-2.584	45.147	-1.725	-1.824	3.488	-3.333	-10.126	45.858
1	32	DD_A507G549:C565U566_DD	-1.63	-1.675	3.06	-2.971	-1.535	47.722	-1.949	1.784	3.199	-1.894	3.667	47.832
1	50	DD_A514G515:C548U508_DD	1.894	-2.732	3.689	1.376	18.735	-75.062	1.534	1.569	4.146	-15.151	1.113	-77.04
1	39	DD_A538G539:C531C532_DD	0.071	-0.883	3.49	1.075	12.608	50.504	-1.885	-0.007	3.199	14.517	-1.238	51.964
1	45	DD_A544G510:C525G526_DD	-3.0	-2.489	3.165	14.255	16.159	60.115	-2.925	3.343	1.828	15.6	-13.762	63.519
1	28	DD_C503C504:G569G570_DD	0.439	-1.698	3.338	0.386	4.286	33.476	-3.613	-0.694	3.108	7.404	-0.667	33.744
1	29	DD_C504C505:G568G569_DD	-0.434	-1.751	3.179	2.691	6.228	30.774	-4.289	1.259	2.734	11.56	-4.995	31.495
1	30	DD_C505C506:G567G568_DD	0.314	-1.746	3.32	-1.088	7.88	31.753	-4.396	-0.736	2.805	14.127	1.951	32.709
1	31	DD_C506A507:U566G567_DD	-1.007	-1.165	3.254	4.507	14.41	35.473	-3.407	2.041	2.473	22.438	-7.018	38.457
1	48	DD_C512U513:G522G523_DD	1.531	-2.305	2.959	2.884	3.888	27.272	-5.644	-2.585	2.754	8.164	-6.055	27.69
1	42	DD_C541C542:G528G529_DD	0.299	-1.79	3.179	2.063	7.441	30.966	-4.494	-0.202	2.7	13.672	-3.79	31.892
1	43	DD_C542G543:C527G528_DD	0.258	-1.93	3.541	1.592	13.084	30.774	-5.459	-0.192	2.542	23.357	-2.841	33.415
1	26	DD_G501G502:U571C572_DD	-0.359	-1.442	2.698	-9.498	4.745	29.267	-3.425	-0.804	2.435	9.025	18.064	31.094
1	27	DD_G502C503:G570U571_DD	0.067	-1.074	3.178	4.24	6.168	42.708	-2.026	0.302	2.996	8.392	-5.769	43.328
1	46	DD_G510U511:A524C525_DD	0.362	-1.912	3.528	-0.391	2.82	36.004	-3.506	-0.643	3.369	4.554	0.632	36.113
1	40	DD_G539G540:C530C531_DD	0.272	-1.669	3.296	-1.87	7.69	32.152	-4.161	-0.778	2.813	13.629	3.314	33.086
1	41	DD_G540C541:G529C530_DD	-0.195	-1.603	3.189	0.624	3.856	35.353	-3.159	0.406	3.0	6.326	-1.023	35.561
1	44	DD_G543A544:G526C527_DD	-1.002	-1.469	3.146	2.692	5.222	34.618	-3.155	2.032	2.818	8.698	-4.484	35.098
1	33	DD_G549G550:C564C565_DD	-0.722	-2.001	3.143	2.997	1.052	34.089	-3.555	1.672	3.009	1.79	-5.098	34.233
1	34	DD_G550G551:C563C564_DD	0.325	-1.422	3.063	-0.867	3.91	31.148	-3.294	-0.749	2.858	7.244	1.605	31.398
1	35	DD_G551G552:C562C563_DD	0.382	-1.816	3.265	4.86	8.406	28.291	-5.146	0.198	2.656	16.591	-9.593	29.879
1	36	DD_G552G553:C561C562_DD	0.72	-2.171	2.839	-7.132	5.87	32.221	-4.53	-2.177	2.215	10.314	12.532	33.485
1	37	DD_G553U554:A558C561_DD	-2.047	-2.967	3.541	-4.109	0.916	94.259	-2.041	1.315	3.585	0.624	2.802	94.331
1	47	DD_U511C512:G523A524_DD	-0.55	-1.723	3.192	1.414	10.527	35.93	-3.934	1.025	2.581	16.622	-2.233	37.418
1	49	DD_U513A514:U508G522_DD	-1.066	-0.934	3.124	0.493	-2.925	66.222	-0.742	0.994	3.151	-2.676	-0.451	66.281
1	38	DD_U554U555:G518A558_DD	1.779	-1.36	3.18	8.395	-3.783	46.306	-1.379	-1.513	3.528	-4.756	-10.552	47.163

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.