A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
Search for released structures

NDB ID: PD0676  PDB ID: 2CV5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.159-0.139-0.501-22.35515.8946.846
14I_DA4:DT289_J0.177-0.0030.0998.296-18.503-5.429
15I_DA5:DT288_J0.08-0.0960.1597.013-15.2932.407
17I_DA7:DT286_J0.15-0.1170.2895.849-9.0580.339
111I_DA11:DT282_J0.124-0.111-0.465.615.909-8.8
117I_DA17:DT276_J-0.043-0.0860.3324.493-4.2631.308
119I_DA19:DT274_J0.078-0.120.567.753-10.7291.03
124I_DA24:DT269_J0.147-0.112-0.136-0.75-10.0270.241
127I_DA27:DT266_J0.229-0.1590.4029.163-22.434-1.504
128I_DA28:DT265_J0.133-0.0880.1686.544-9.9793.519
129I_DA29:DT264_J0.162-0.0190.185.021-21.575-1.99
130I_DA30:DT263_J0.042-0.104-0.1077.452-14.0965.596
135I_DA35:DT258_J-0.04-0.127-0.163-7.304-3.8432.697
141I_DA41:DT252_J-0.034-0.0380.338-3.097-2.089-9.534
142I_DA42:DT251_J0.171-0.050.08-10.0745.933-3.685
143I_DA43:DT250_J0.158-0.108-0.188-1.824-5.257-0.502
151I_DA51:DT242_J0.075-0.158-0.439-5.207-2.7945.478
154I_DA54:DT239_J0.077-0.318-1.158-7.852-1.176-1.273
155I_DA55:DT238_J-0.211-0.163-0.293-0.867-14.638-0.184
156I_DA56:DT237_J0.1870.0160.10822.168-14.2330.161
157I_DA57:DT236_J0.2430.1030.0719.561-31.914-7.748
161I_DA61:DT232_J0.071-0.1-0.52-9.309-12.7112.95
167I_DA67:DT226_J0.119-0.007-0.307-2.159-32.896-4.878
172I_DA72:DT221_J0.176-0.056-0.1430.57-4.936-0.805
173I_DA73:DT220_J0.116-0.082-0.455-5.383-8.0573.277
177I_DA77:DT216_J0.2710.108-0.0762.273-25.366-9.426
182I_DA82:DT211_J0.124-0.105-0.38-0.089-11.322-0.95
183I_DA83:DT210_J0.089-0.144-0.4372.531-7.7712.916
185I_DA85:DT208_J0.122-0.136-0.0171.902-12.4782.951
195I_DA95:DT198_J0.161-0.164-0.053-13.703-7.6062.623
199I_DA99:DT194_J0.1910.088-0.029-3.242-24.213-8.842
1102I_DA102:DT191_J-0.055-0.157-0.204-1.078-10.6387.564
1109I_DA109:DT184_J-0.031-0.155-0.1180.216-17.5542.631
1110I_DA110:DT183_J-0.027-0.18-0.1712.845-16.3050.76
1111I_DA111:DT182_J-0.045-0.043-0.645-2.826-3.963-2.16
1113I_DA113:DT180_J-0.026-0.087-0.221-7.084-6.712.405
1115I_DA115:DT178_J-0.019-0.25-0.117.087-6.0974.978
1124I_DA124:DT169_J-0.004-0.2430.00713.317-2.2892.17
1126I_DA126:DT167_J-0.012-0.144-0.189-0.201-17.1981.366
1127I_DA127:DT166_J-0.015-0.129-0.181-1.82-13.338-1.441
1133I_DA133:DT160_J-0.033-0.078-0.2073.669-10.3960.271
1139I_DA139:DT154_J0.08-0.119-0.217-7.464-10.957-2.825
1141I_DA141:DT152_J0.123-0.0650.1536.167-7.5940.559
1145I_DA145:DT148_J0.1-0.083-0.0863.94-21.2740.997
13I_DC3:DG290_J0.1220.02-0.294-2.1280.643-0.384
19I_DC9:DG284_J-0.132-0.114-0.287-15.439-6.491-1.647
110I_DC10:DG283_J0.114-0.255-0.9167.362-5.697-0.583
112I_DC12:DG281_J0.016-0.106-0.68511.5251.376-3.188
113I_DC13:DG280_J0.006-0.159-0.589-6.292-4.725-0.641
116I_DC16:DG277_J0.197-0.0650.0369.631-23.06-1.114
122I_DC22:DG271_J0.106-0.0350.272-13.346-18.114-0.929
125I_DC25:DG268_J-0.048-0.0160.081.745-9.773-0.41
126I_DC26:DG267_J0.152-0.0710.1312.024-17.2850.759
144I_DC44:DG249_J0.068-0.091-0.2832.012-7.486-1.243
147I_DC47:DG246_J0.036-0.3231.12-4.78-18.13-3.252
149I_DC49:DG244_J-0.007-0.009-0.115-0.03-11.798-1.16
150I_DC50:DG243_J0.196-0.03-0.54110.019-14.8722.837
153I_DC53:DG240_J0.113-0.119-0.98617.699-11.8551.966
160I_DC60:DG233_J0.1320.0060.233.36-3.684-0.19
166I_DC66:DG227_J0.1480.008-0.1568.1421.96-0.467
169I_DC69:DG224_J0.045-0.1550.737-3.044-20.294-7.682
176I_DC76:DG217_J0.136-0.0150.133-0.190.474-0.572
179I_DC79:DG214_J-0.03-0.1490.3473.022-26.347-4.57
184I_DC84:DG209_J0.036-0.229-0.9439.602-12.9222.633
188I_DC88:DG205_J-0.10.0350.5480.671-22.407-5.537
189I_DC89:DG204_J0.219-0.0930.481-9.745-6.1260.13
1101I_DC101:DG192_J0.184-0.0360.395.639-14.862-0.391
1107I_DC107:DG186_J0.336-0.1720.144-5.2675.2693.31
1108I_DC108:DG185_J0.191-0.1650.3661.025-18.268-3.832
1114I_DC114:DG179_J0.0650.0010.316-4.186-7.061-0.15
1116I_DC116:DG177_J0.233-0.085-0.3657.76-6.1772.834
1129I_DC129:DG164_J0.146-0.19-0.259-1.93-6.4981.645
1132I_DC132:DG161_J0.241-0.093-0.0874.277-5.1813.285
115I_DG15:DC278_J-0.142-0.065-0.579-5.093-5.4330.143
118I_DG18:DC275_J-0.19-0.0110.2394.519-13.7842.272
131I_DG31:DC262_J-0.256-0.147-0.013-2.107-7.1221.684
133I_DG33:DC260_J-0.226-0.154-0.776-11.614-8.6893.406
139I_DG39:DC254_J-0.150.009-0.1350.791-1.9822.471
140I_DG40:DC253_J0.123-0.0540.88519.223-11.275-2.584
146I_DG46:DC247_J-0.191-0.1040.337-3.316-8.481.348
158I_DG58:DC235_J-0.015-0.1250.6888.773-7.119-5.04
159I_DG59:DC234_J-0.14-0.0760.15410.5780.6720.178
163I_DG63:DC230_J-0.298-0.015-0.404-12.259-2.1732.021
168I_DG68:DC225_J-0.236-0.124-0.058-2.131-4.042-0.78
171I_DG71:DC222_J-0.122-0.194-0.615-4.312-9.9361.085
178I_DG78:DC215_J-0.017-0.1780.2371.476-4.556-1.003
181I_DG81:DC212_J-0.355-0.095-0.026-0.9942.4963.687
187I_DG87:DC206_J-0.251-0.038-0.2123.099-2.4892.284
194I_DG94:DC199_J-0.093-0.149-0.533-12.754-4.9181.543
197I_DG97:DC196_J-0.035-0.07-0.434-0.675-12.481-0.637
198I_DG98:DC195_J-0.0470.037-0.2980.651-1.0251.459
1100I_DG100:DC193_J-0.127-0.215-0.413-5.322-8.5741.772
1103I_DG103:DC190_J-0.164-0.039-0.066-9.913-8.9011.188
1121I_DG121:DC172_J-0.013-0.1530.4382.402-10.232-2.097
1122I_DG122:DC171_J-0.14-0.026-0.222-4.504-12.8511.829
1125I_DG125:DC168_J-0.0940.0330.13711.408-11.1680.524
1131I_DG131:DC162_J-0.246-0.074-0.145-11.592-6.4391.919
1134I_DG134:DC159_J0.093-0.134-0.1981.464-6.9450.06
1135I_DG135:DC158_J-0.151-0.239-0.722-6.9030.786-1.459
1137I_DG137:DC156_J-0.247-0.023-0.2070.847-6.8343.093
1138I_DG138:DC155_J0.078-0.063-0.09812.418-12.51.524
1144I_DG144:DC149_J0.023-0.0710.3311.13-8.474-2.484
12I_DT2:DA291_J-0.162-0.0711.025-20.696-1.623-5.474
16I_DT6:DA287_J0.06-0.05-0.3815.099-5.612-2.29
18I_DT8:DA285_J0.005-0.014-0.1081.469-11.601-1.246
114I_DT14:DA279_J0.05-0.118-0.258-3.197-22.105-1.163
120I_DT20:DA273_J0.0-0.069-0.0326.873-15.5014.085
121I_DT21:DA272_J0.041-0.1990.156-5.415-13.9596.096
123I_DT23:DA270_J-0.008-0.1430.145-16.564-15.0484.103
132I_DT32:DA261_J0.014-0.085-0.001-4.7980.224-2.719
134I_DT34:DA259_J-0.008-0.065-0.3046.814-6.9821.677
136I_DT36:DA257_J-0.135-0.0220.062-0.932-12.831-4.348
137I_DT37:DA256_J-0.14-0.090.287-2.966-12.439-3.064
138I_DT38:DA255_J-0.021-0.1260.501-4.769-13.0480.801
145I_DT45:DA248_J-0.124-0.110.285-1.524-12.944-3.883
148I_DT48:DA245_J-0.2350.045-0.0440.542-10.033-5.702
152I_DT52:DA241_J0.003-0.001-0.43516.734-8.087-1.777
162I_DT62:DA231_J-0.04-0.057-0.464-3.163-17.7372.071
164I_DT64:DA229_J0.107-0.101-0.11-3.655-11.4830.106
165I_DT65:DA228_J-0.005-0.177-0.112-0.36-2.513-0.601
170I_DT70:DA223_J-0.128-0.033-0.043-15.604-10.163-5.784
174I_DT74:DA219_J0.013-0.178-0.146-3.043-6.7776.587
175I_DT75:DA218_J-0.002-0.135-0.3180.231-7.3533.405
180I_DT80:DA213_J-0.074-0.08-0.127-6.606-8.852-6.034
186I_DT86:DA207_J-0.111-0.1490.0342.404-7.353.92
190I_DT90:DA203_J-0.2340.0660.532-9.493-22.165-4.967
191I_DT91:DA202_J0.08-0.072-0.108-0.563-10.4530.821
192I_DT92:DA201_J0.175-0.229-0.325-6.937-8.646.072
193I_DT93:DA200_J0.096-0.08-0.161-6.554-7.9752.146
196I_DT96:DA197_J-0.194-0.090.104-2.84-8.7032.411
1104I_DT104:DA189_J-0.076-0.1550.4610.855-5.9853.019
1105I_DT105:DA188_J-0.056-0.0450.144-2.722-8.3691.851
1106I_DT106:DA187_J-0.1090.0190.081-8.494-14.641-0.391
1112I_DT112:DA181_J-0.0930.018-0.0920.319-8.13-1.25
1117I_DT117:DA176_J-0.046-0.012-0.1760.739-9.344-2.592
1118I_DT118:DA175_J-0.031-0.2330.159-5.361-10.1745.001
1119I_DT119:DA174_J-0.130.0450.128-8.697-15.738-1.171
1120I_DT120:DA173_J0.011-0.0980.048-8.101-20.9490.6
1123I_DT123:DA170_J-0.111-0.085-0.20210.424-5.5152.305
1128I_DT128:DA165_J-0.026-0.2090.074-4.471-17.4570.252
1130I_DT130:DA163_J0.005-0.1660.439-4.67-20.355-4.635
1136I_DT136:DA157_J0.011-0.1350.227-5.341-7.523-4.118
1140I_DT140:DA153_J-0.147-0.11-0.2996.151-2.3451.396
1142I_DT142:DA151_J-0.025-0.012-0.09910.216-9.3171.283
1143I_DT143:DA150_J-0.072-0.07-0.42211.633-9.812-1.075
1146I_DT146:DA147_J0.117-0.068-0.6625.014-12.231-4.16

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.