2D19: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 2D19 PDB ID: 2D19

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	14	A_A11:U8_B	0.814	0.03	0.522	3.281	-12.119	3.029
1	2	A_C2:G16_A	0.642	-0.197	0.53	-0.209	-6.87	-3.389
1	13	A_C10:G9_B	-0.933	-0.101	0.436	4.552	-11.182	-10.209
1	15	A_C12:G7_B	0.747	-0.187	0.156	-7.902	-18.066	1.615
1	1	A_G1:C17_A	-0.849	-0.252	0.747	12.411	-6.752	-3.343
1	4	A_G4:C14_A	-1.025	-0.15	-0.224	-4.368	8.556	0.471
1	10	A_G7:C12_B	0.154	0.002	0.348	5.999	-17.672	0.397
1	12	A_G9:C10_B	0.83	-0.025	0.216	-4.03	-9.901	-9.169
1	3	A_U3:G15_A	1.748	-0.375	0.348	-1.818	-13.922	-1.942
1	11	A_U8:A11_B	-0.783	0.003	0.658	-2.232	-13.645	1.273
1	9	B_A5:A13_B	1.468	0.447	-0.681	-35.908	-14.843	-178.104
1	6	B_C2:G16_B	0.565	-0.161	0.555	-1.337	-7.063	-3.14
1	5	B_G1:C17_B	-0.896	-0.3	0.759	12.604	-8.47	-4.381
1	8	B_G4:C14_B	-1.09	-0.236	0.113	-8.892	-4.802	-0.757
1	7	B_U3:G15_B	1.626	-0.344	0.353	-1.817	-10.625	-0.156

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.