2D19: Base Pair Morphology Step Parameters

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NDB ID: 2D19 PDB ID: 2D19

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	13	AA_A11C12:G7U8_BB	-0.172	-2.194	3.221	4.555	0.22	34.736	-3.678	0.957	3.16	0.367	-7.589	35.025
1	2	AA_C2U3:G15G16_AA	0.424	-1.824	3.012	2.949	0.423	37.235	-2.899	-0.303	3.016	0.661	-4.61	37.35
1	12	AA_C10A11:U8G9_BB	1.436	-1.7	2.937	1.912	7.543	36.005	-3.572	-2.051	2.611	12.03	-3.049	36.809
1	1	AA_G1C2:G16C17_AA	-0.018	-1.883	3.454	0.242	0.833	39.413	-2.895	0.057	3.415	1.234	-0.359	39.422
1	9	AA_G7U8:A11C12_BB	0.192	-2.298	3.094	-3.253	1.035	29.701	-4.655	-1.0	2.977	2.01	6.319	29.892
1	11	AA_G9C10:G9C10_BB	0.351	-1.817	2.826	-2.375	-1.525	26.091	-3.643	-1.334	2.883	-3.365	5.241	26.24
1	3	AA_U3G4:C14G15_AA	0.01	-2.331	2.86	2.709	11.631	25.033	-6.903	0.452	1.627	25.092	-5.844	27.694
1	10	AA_U8G9:C10A11_BB	-1.542	-1.651	2.925	0.094	11.237	37.733	-3.556	2.301	2.354	16.92	-0.142	39.313
1	8	BA_A5G7:C12A13_BB	-3.582	0.732	1.283	-135.08	-76.158	-29.884	-0.574	-1.477	-2.325	42.599	-75.557	-155.926
1	5	BB_C2U3:G15G16_BB	0.56	-1.795	3.007	3.033	-0.838	35.932	-2.789	-0.504	3.082	-1.355	-4.905	36.065
1	4	BB_G1C2:G16C17_BB	0.036	-1.787	3.475	0.092	1.222	39.912	-2.765	-0.041	3.422	1.79	-0.135	39.93
1	7	BB_G4A5:A13C14_BB	-3.831	-0.112	0.437	79.364	141.442	115.073	-0.026	1.905	-0.68	71.919	-40.355	170.466
1	6	BB_U3G4:C14G15_BB	0.085	-2.375	2.851	3.56	10.54	26.582	-6.524	0.419	1.794	21.752	-7.348	28.777

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.