A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 30-Nov-2022 number of released structures: 12490
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NDB ID: PR0184  PDB ID: 2D6F 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11E_A901:U972_E0.0280.148-0.3487.264-18.532-10.821
119E_A914:U908_E-2.581-0.210.2561.70836.174-106.333
18E_A949:U965_E-0.359-0.051-0.968-20.814-7.199-12.162
14E_C904:G969_E0.08-0.1880.8947.572-1.371.432
15E_C905:G968_E0.058-0.135-0.8526.814-1.709-2.444
16E_C906:G967_E0.244-0.07-0.163-4.087-9.2434.131
124E_C927:G943_E1.477-0.178-0.2916.141-14.87-8.292
110E_C951:G963_E-0.5370.0120.755-12.709-7.461-4.567
121E_C959:U916_E1.8781.3020.041-7.4817.364174.133
12E_G902:C971_E-0.253-0.329-1.114-16.878-21.434.895
17E_G907:C966_E-0.4580.071-0.73-43.006-31.27.433
117E_G909:C923_E3.398-5.6830.9975.66622.438174.704
115E_G910:U925_E-3.542-0.2920.252-0.756-9.5514.649
116E_G911:C924_E-0.4590.103-1.122-12.309-13.214-3.941
120E_G915:C948_E-0.1484.885-1.285-1.711-34.773142.714
123E_G918:C956_E0.80.0731.248-27.728-22.1695.078
126E_G929:C941_E-0.0840.0830.293-14.06614.958-18.767
127E_G930:C940_E-0.6830.0770.0698.137-10.6158.307
128E_G931:C939_E1.329-0.234-0.718-5.378-9.204-3.544
19E_G950:C964_E-0.6870.031-0.139-15.288-13.1312.262
111E_G952:C962_E-0.588-0.6060.384-1.858-22.5031.206
112E_G953:C961_E0.023-0.386-0.172-13.478-23.021-0.044
13E_U903:A970_E-0.016-0.143-0.5276.348-7.4926.15
118E_U913:U922_E1.687-1.1530.89-0.663-17.34730.673
125E_U928:G942_E2.191-0.766-0.76320.501-19.457-5.439
113E_U954:A958_E4.159-2.431-0.597-10.380.273-90.103
114E_U955:G917_E0.468-6.26-0.33821.04835.628-91.816
122E_U960:A920_E-1.566-0.1161.079-35.956-41.982-24.687
129F_A901:U972_F-1.036-0.373-0.265-7.547-15.3460.174
154F_A914:U908_F-3.996-1.9530.2361.76131.673-100.523
143F_A938:C932_F-4.179-0.9660.5154.6223.3677.669
136F_A949:U965_F0.8660.226-0.923-7.942-11.284-17.662
132F_C904:G969_F0.9060.452-0.6098.821-18.2723.479
133F_C905:G968_F0.9350.152-0.4938.784-0.6488.311
134F_C906:G967_F-0.4630.15-0.2956.574-23.45722.139
144F_C939:G931_F0.327-0.11-0.20321.34-10.8860.503
145F_C940:G930_F1.138-0.421-1.11110.657-14.7373.963
146F_C941:G929_F0.653-0.1690.0172.732.838-7.024
149F_C944:G926_F-0.5460.2530.356-24.951-15.225.833
138F_C951:G963_F-0.198-0.1570.473-11.8795.051-2.727
130F_G902:C971_F-1.6610.2830.364-2.569-22.41424.635
135F_G907:C966_F0.7870.2170.81.8942.05111.312
150F_G910:U925_F-2.331-0.33-0.1141.903-4.06918.193
151F_G911:C924_F0.194-0.278-0.414-4.864-13.082.27
152F_G912:C923_F1.433-0.055-1.115-16.097-15.932-11.968
155F_G915:A921_F-3.4932.1471.061-42.467-11.94781.835
157F_G918:C956_F0.109-0.1921.129-40.216-23.1912.323
147F_G942:U928_F-1.3530.692-0.049-1.60913.85114.199
148F_G943:C927_F-1.8330.247-0.558-19.497-22.33716.28
137F_G950:C964_F0.2490.073-0.128-11.221-8.625.19
139F_G952:C962_F0.319-0.4220.2575.689-6.697-1.041
140F_G953:C961_F-0.041-0.1550.104-10.647-12.0254.223
131F_U903:A970_F0.1330.1620.8921.208-9.0925.996
153F_U913:U922_F1.068-1.4840.9479.518-17.35418.636
156F_U916:C959_F2.2130.956-0.385-7.71216.017178.608
141F_U954:A958_F3.967-1.4420.994-13.27120.737-106.856
142F_U955:G917_F0.151-5.5740.6859.37422.186-106.611

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.