A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: GDL003  PDB ID: 2DND 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_DA4:DT21_B0.279-0.1480.24612.897-14.445-12.269
15A_DA5:DT20_B0.437-0.1570.522-0.139-16.378-7.574
16A_DA6:DT19_B-0.059-0.233-0.0964.188-20.847-4.185
11A_DC1:DG24_B-0.229-0.1670.01510.227-7.845-3.545
13A_DC3:DG22_B-0.523-0.055-0.0144.027-17.931-0.63
111A_DC11:DG14_B-0.183-0.0330.773-6.075-10.095-2.364
12A_DG2:DC23_B0.061-0.1230.6167.601-14.5010.964
110A_DG10:DC15_B0.034-0.0540.42615.237-4.5840.055
112A_DG12:DC13_B-0.126-0.166-0.2090.219-14.315-1.323
17A_DT7:DA18_B0.148-0.02-0.145-9.297-19.7823.661
18A_DT8:DA17_B-0.4270.024-0.08-9.719-17.144-4.374
19A_DT9:DA16_B-0.278-0.218-0.32-12.603-23.752-1.204

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.