A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: AH0024  PDB ID: 2DQQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_DC1:G18_B0.163-0.036-0.72618.4972.49-3.996
13A_DC3:G16_B0.376-0.17-0.2849.4963.0791.97
16A_DC6:G13_B0.185-0.197-0.422.0130.54-1.084
19A_DC9:G10_B0.543-0.078-0.68523.729-2.757-4.456
14A_DT4:A15_B0.079-0.031-0.52111.089-11.8680.64
17A_DT7:A12_B-0.236-0.013-0.61710.561-1.407-5.247
18A_DT8:A11_B-0.204-0.184-0.80222.403-0.482-3.718
12A_OMU2:A17_B-0.433-0.10.0223.695-12.2393.503
15A_OMU5:A14_B-0.154-0.146-0.1243.561-20.3947.547

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.