2DQQ: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: AH0024 PDB ID: 2DQQ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_DC1:G18_B	0.163	-0.036	-0.726	18.497	2.49	-3.996
1	3	A_DC3:G16_B	0.376	-0.17	-0.284	9.496	3.079	1.97
1	6	A_DC6:G13_B	0.185	-0.197	-0.42	2.013	0.54	-1.084
1	9	A_DC9:G10_B	0.543	-0.078	-0.685	23.729	-2.757	-4.456
1	4	A_DT4:A15_B	0.079	-0.031	-0.521	11.089	-11.868	0.64
1	7	A_DT7:A12_B	-0.236	-0.013	-0.617	10.561	-1.407	-5.247
1	8	A_DT8:A11_B	-0.204	-0.184	-0.802	22.403	-0.482	-3.718
1	2	A_OMU2:A17_B	-0.433	-0.1	0.022	3.695	-12.239	3.503
1	5	A_OMU5:A14_B	-0.154	-0.146	-0.124	3.561	-20.394	7.547

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.