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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
PR0212
PDB ID:
2DR2
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
B_A2:U71_B
-1.241
-0.178
-0.354
11.828
-18.973
6.501
1
14
B_A21:A14_B
6.108
-0.045
-0.506
-11.598
14.285
69.143
1
23
B_A31:U39_B
1.13
-0.148
-0.284
-13.878
-16.728
-2.872
1
3
B_C3:G70_B
0.442
0.093
-0.472
15.75
-9.871
8.938
1
4
B_C4:G69_B
0.573
-0.029
-0.433
4.51
-8.486
6.18
1
6
B_C6:G67_B
-0.078
-0.068
-0.123
7.764
-18.612
5.388
1
16
B_C23:G12_B
0.672
-0.194
1.5
29.032
-20.24
4.07
1
17
B_C25:G10_B
1.621
0.75
-0.027
-0.66
16.365
22.717
1
20
B_C28:G42_B
0.918
0.206
-0.051
-4.771
-9.796
10.457
1
24
B_C32:A38_B
2.513
-0.201
0.746
-13.494
8.76
-104.216
1
9
B_C50:G64_B
-0.548
-0.443
0.063
-1.18
-12.875
-3.268
1
1
B_G1:C72_B
0.096
-0.082
-1.132
13.166
-12.329
-10.49
1
7
B_G7:C66_B
-0.156
-0.075
0.066
-5.11
-14.255
0.12
1
15
B_G22:C13_B
-1.866
-0.226
-0.299
14.629
14.321
17.644
1
18
B_G26:A44_B
-0.186
2.216
0.316
35.044
0.331
-12.356
1
22
B_G30:C40_B
-0.067
0.105
-0.573
-18.671
-17.889
9.522
1
8
B_G49:U65_B
-2.256
-0.45
0.214
2.914
-11.817
8.451
1
10
B_G51:C63_B
0.399
-0.187
-0.255
-14.99
-20.685
5.051
1
12
B_G53:C61_B
0.814
0.181
0.448
-0.886
-11.933
10.173
1
5
B_U5:G68_B
2.091
-0.467
0.899
-7.765
3.351
2.05
1
19
B_U27:A43_B
0.332
0.144
-0.254
14.674
-10.365
-3.987
1
21
B_U29:A41_B
0.116
-0.129
0.281
2.85
-2.24
10.85
1
11
B_U52:A62_B
-0.122
-0.123
-0.117
1.743
-12.754
-1.064
1
13
B_U54:A58_B
4.083
-1.284
0.244
12.847
7.97
-82.716
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.