A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687
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NDB ID: PR0212  PDB ID: 2DR2 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_A2:U71_B-1.241-0.178-0.35411.828-18.9736.501
114B_A21:A14_B6.108-0.045-0.506-11.59814.28569.143
123B_A31:U39_B1.13-0.148-0.284-13.878-16.728-2.872
13B_C3:G70_B0.4420.093-0.47215.75-9.8718.938
14B_C4:G69_B0.573-0.029-0.4334.51-8.4866.18
16B_C6:G67_B-0.078-0.068-0.1237.764-18.6125.388
116B_C23:G12_B0.672-0.1941.529.032-20.244.07
117B_C25:G10_B1.6210.75-0.027-0.6616.36522.717
120B_C28:G42_B0.9180.206-0.051-4.771-9.79610.457
124B_C32:A38_B2.513-0.2010.746-13.4948.76-104.216
19B_C50:G64_B-0.548-0.4430.063-1.18-12.875-3.268
11B_G1:C72_B0.096-0.082-1.13213.166-12.329-10.49
17B_G7:C66_B-0.156-0.0750.066-5.11-14.2550.12
115B_G22:C13_B-1.866-0.226-0.29914.62914.32117.644
118B_G26:A44_B-0.1862.2160.31635.0440.331-12.356
122B_G30:C40_B-0.0670.105-0.573-18.671-17.8899.522
18B_G49:U65_B-2.256-0.450.2142.914-11.8178.451
110B_G51:C63_B0.399-0.187-0.255-14.99-20.6855.051
112B_G53:C61_B0.8140.1810.448-0.886-11.93310.173
15B_U5:G68_B2.091-0.4670.899-7.7653.3512.05
119B_U27:A43_B0.3320.144-0.25414.674-10.365-3.987
121B_U29:A41_B0.116-0.1290.2812.85-2.2410.85
111B_U52:A62_B-0.122-0.123-0.1171.743-12.754-1.064
113B_U54:A58_B4.083-1.2840.24412.8477.97-82.716

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.