2DR2: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687

Search for released structures

NDB ID: PR0212 PDB ID: 2DR2

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	B_A2:U71_B	-1.241	-0.178	-0.354	11.828	-18.973	6.501
1	14	B_A21:A14_B	6.108	-0.045	-0.506	-11.598	14.285	69.143
1	23	B_A31:U39_B	1.13	-0.148	-0.284	-13.878	-16.728	-2.872
1	3	B_C3:G70_B	0.442	0.093	-0.472	15.75	-9.871	8.938
1	4	B_C4:G69_B	0.573	-0.029	-0.433	4.51	-8.486	6.18
1	6	B_C6:G67_B	-0.078	-0.068	-0.123	7.764	-18.612	5.388
1	16	B_C23:G12_B	0.672	-0.194	1.5	29.032	-20.24	4.07
1	17	B_C25:G10_B	1.621	0.75	-0.027	-0.66	16.365	22.717
1	20	B_C28:G42_B	0.918	0.206	-0.051	-4.771	-9.796	10.457
1	24	B_C32:A38_B	2.513	-0.201	0.746	-13.494	8.76	-104.216
1	9	B_C50:G64_B	-0.548	-0.443	0.063	-1.18	-12.875	-3.268
1	1	B_G1:C72_B	0.096	-0.082	-1.132	13.166	-12.329	-10.49
1	7	B_G7:C66_B	-0.156	-0.075	0.066	-5.11	-14.255	0.12
1	15	B_G22:C13_B	-1.866	-0.226	-0.299	14.629	14.321	17.644
1	18	B_G26:A44_B	-0.186	2.216	0.316	35.044	0.331	-12.356
1	22	B_G30:C40_B	-0.067	0.105	-0.573	-18.671	-17.889	9.522
1	8	B_G49:U65_B	-2.256	-0.45	0.214	2.914	-11.817	8.451
1	10	B_G51:C63_B	0.399	-0.187	-0.255	-14.99	-20.685	5.051
1	12	B_G53:C61_B	0.814	0.181	0.448	-0.886	-11.933	10.173
1	5	B_U5:G68_B	2.091	-0.467	0.899	-7.765	3.351	2.05
1	19	B_U27:A43_B	0.332	0.144	-0.254	14.674	-10.365	-3.987
1	21	B_U29:A41_B	0.116	-0.129	0.281	2.85	-2.24	10.85
1	11	B_U52:A62_B	-0.122	-0.123	-0.117	1.743	-12.754	-1.064
1	13	B_U54:A58_B	4.083	-1.284	0.244	12.847	7.97	-82.716

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.