2DR7: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0214 PDB ID: 2DR7

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	B_C3:G29_B	0.465	0.218	0.193	2.444	-7.238	3.159
1	4	B_C4:G28_B	-0.34	0.094	-0.059	-2.431	-7.391	3.276
1	5	B_C5:G27_B	0.063	0.252	-0.106	6.319	-5.121	9.926
1	10	B_C10:G22_B	-0.356	-0.421	0.611	-3.937	-14.575	-7.213
1	1	B_G1:C31_B	-0.532	-0.085	0.622	6.575	-5.526	-0.758
1	2	B_G2:C30_B	-0.346	0.04	0.394	11.851	-8.265	4.664
1	6	B_G6:U26_B	-2.801	0.1	-0.396	-3.572	-9.418	17.496
1	7	B_G7:C25_B	-0.155	0.071	-0.385	-8.738	-14.516	-9.645
1	8	B_G8:C24_B	0.406	-0.248	-0.225	-4.997	-12.627	1.647
1	9	B_G9:C23_B	-0.7	-0.009	0.062	-11.24	-16.082	-3.524
1	11	B_G11:C21_B	0.619	-0.103	0.321	0.286	-13.084	3.624
1	12	B_G12:C20_B	0.832	0.13	-0.022	-6.124	-16.371	-1.497
1	13	B_U13:A17_B	4.508	-2.684	-0.122	-7.493	6.834	-87.071

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.