2DU3: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: PR0219 PDB ID: 2DU3

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	DD_A904G905:C967U968_DD	-1.016	-1.597	3.63	5.216	0.546	28.684	-3.302	3.247	3.366	1.09	-10.419	29.149
1	21	DD_A912G913:G909U922_DD	0.856	-2.855	2.735	10.06	1.031	114.939	-1.7	-0.416	2.762	0.611	-5.96	115.224
1	23	DD_A914G915:C947A946_DD	-0.171	2.386	3.355	1.377	6.541	53.596	2.198	0.279	3.596	7.222	-1.521	53.981
1	2	DD_C902C903:G969G970_DD	-2.542	-3.523	4.354	8.71	14.175	23.796	-9.945	6.865	1.137	30.112	-18.504	28.967
1	3	DD_C903A904:U968G969_DD	2.004	-1.32	3.452	-4.328	7.666	36.78	-3.009	-3.642	2.884	11.94	6.741	37.783
1	20	DD_C911A912:U922G923_DD	0.671	-1.602	3.677	-6.522	21.938	29.744	-5.279	-1.873	1.912	36.676	10.903	37.372
1	15	DD_C939C940:G928G929_DD	-0.199	-1.577	3.723	-2.351	10.28	29.619	-4.966	-0.102	3.027	19.352	4.425	31.4
1	16	DD_C940G941:C927G928_DD	0.429	-1.821	3.521	-0.136	15.946	31.162	-5.331	-0.734	2.34	27.539	0.234	34.915
1	18	DD_C942G910:C924G925_DD	-4.329	-2.335	2.963	18.351	-13.715	74.54	-1.54	3.894	2.344	-11.076	-14.82	77.49
1	8	DD_C948C949:G963G964_DD	0.125	-1.93	2.757	4.878	10.2	37.602	-3.818	0.264	2.18	15.404	-7.367	39.206
1	9	DD_C949C950:G962G963_DD	-0.166	-1.75	3.187	-0.514	9.094	29.512	-4.876	0.223	2.55	17.338	0.98	30.855
1	10	DD_C950G951:C961G962_DD	0.69	-1.649	3.325	0.405	12.917	27.377	-5.549	-1.248	2.335	25.564	-0.802	30.221
1	1	DD_G901C902:G970C971_DD	-0.617	-2.325	4.09	-5.606	13.765	46.765	-4.026	0.248	3.368	16.85	6.863	48.943
1	5	DD_G905G906:C966C967_DD	1.97	-2.431	2.637	-1.191	8.317	22.985	-7.457	-4.896	1.571	20.033	2.868	24.453
1	6	DD_G906G907:C965C966_DD	-0.577	-1.948	4.106	2.305	5.736	42.71	-3.334	1.06	3.791	7.827	-3.145	43.134
1	7	DD_G907C948:G964C965_DD	-0.57	-1.857	2.743	11.735	6.703	38.668	-3.227	1.809	2.151	9.766	-17.099	40.876
1	19	DD_G910C911:G923C924_DD	-0.292	-1.514	3.359	3.337	0.472	36.19	-2.494	0.943	3.301	0.758	-5.358	36.341
1	22	DD_G913A914:A946G909_DD	-2.744	-1.147	3.602	9.153	3.793	-133.482	0.596	-1.424	3.71	-2.064	4.979	-133.666
1	24	DD_G915U920:A958C947_DD	-0.472	-3.939	-4.796	-143.168	39.443	-70.559	2.513	1.549	-2.364	-21.447	-77.848	-154.397
1	17	DD_G941C942:G925C927_DD	-0.038	-3.772	5.944	-16.232	9.029	52.12	-5.007	-1.633	5.08	9.925	17.842	55.112
1	11	DD_G951G952:C960C961_DD	0.507	-2.044	3.666	0.2	9.672	33.466	-4.946	-0.816	2.981	16.375	-0.339	34.798
1	12	DD_G952U953:A957C960_DD	-1.896	-1.832	3.104	0.537	-1.365	89.96	-1.269	1.351	3.117	-0.966	-0.38	89.969
1	14	DD_U938C939:G929A930_DD	-0.031	-1.219	3.339	6.761	2.539	33.953	-2.436	1.096	3.177	4.288	-11.417	34.69
1	13	DD_U953U954:G917A957_DD	1.676	-1.284	3.139	11.532	-1.751	43.59	-1.513	-1.117	3.497	-2.309	-15.208	45.05

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.