2DU4: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0220 PDB ID: 2DU4

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	C_A904:U968_C	0.013	-0.057	0.406	-28.062	-23.026	10.771
1	23	C_A912:U922_C	-0.187	-0.016	-0.433	-27.998	-20.591	12.142
1	25	C_A914:U908_C	-4.12	-1.794	1.682	-7.079	42.036	-94.943
1	15	C_A937:C931_C	-3.434	-0.299	-0.152	-10.891	-19.162	-7.127
1	2	C_C903:G969_C	0.383	-0.309	-1.252	1.247	0.155	2.055
1	22	C_C911:G923_C	0.399	-0.203	-0.986	11.377	-22.086	10.547
1	17	C_C939:G929_C	0.429	0.001	-0.16	26.88	-26.573	4.67
1	18	C_C940:G928_C	0.252	0.019	-0.447	12.639	6.025	-0.131
1	20	C_C942:G925_C	0.478	1.347	1.415	-46.933	9.884	-30.989
1	7	C_C948:G964_C	0.081	0.02	0.657	-0.178	-18.913	-1.806
1	8	C_C949:G963_C	0.24	-0.012	0.313	5.979	-22.042	4.194
1	9	C_C950:G962_C	0.092	0.078	-0.214	10.011	-19.12	4.713
1	1	C_G901:C971_C	-0.066	-0.012	1.052	20.969	-10.296	0.43
1	4	C_G905:C967_C	-0.17	-0.015	-0.396	-17.906	2.877	0.61
1	5	C_G906:C966_C	-0.169	-0.343	1.507	13.711	-12.922	1.744
1	6	C_G907:C965_C	-0.193	-0.582	1.163	-20.5	-23.565	-10.597
1	21	C_G910:C924_C	-0.163	-0.114	-0.75	4.115	-3.242	0.252
1	24	C_G913:G909_C	5.698	-0.807	1.614	-26.559	27.883	-108.444
1	26	C_G915:A946_C	1.979	-5.757	1.129	-2.718	13.314	-166.296
1	14	C_G918:C955_C	-0.407	0.136	-0.288	-26.838	-29.868	6.234
1	19	C_G941:C927_C	-0.296	0.126	0.012	-20.365	-8.052	2.053
1	10	C_G951:C961_C	-0.232	-0.128	0.252	-0.059	-16.472	2.312
1	11	C_G952:C960_C	-0.273	-0.268	0.165	-14.532	-19.942	6.199
1	27	C_U920:A958_C	-3.409	2.235	-1.107	51.409	-11.212	-101.326
1	16	C_U938:A930_C	0.085	-0.101	0.091	8.379	-21.334	7.115
1	12	C_U953:A957_C	4.435	-3.028	0.609	-7.036	13.169	-84.405
1	13	C_U954:G917_C	-0.015	-6.488	0.505	18.572	14.735	-109.777

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.