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As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0220  PDB ID: 2DU4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_A904:U968_C0.013-0.0570.406-28.062-23.02610.771
123C_A912:U922_C-0.187-0.016-0.433-27.998-20.59112.142
125C_A914:U908_C-4.12-1.7941.682-7.07942.036-94.943
115C_A937:C931_C-3.434-0.299-0.152-10.891-19.162-7.127
12C_C903:G969_C0.383-0.309-1.2521.2470.1552.055
122C_C911:G923_C0.399-0.203-0.98611.377-22.08610.547
117C_C939:G929_C0.4290.001-0.1626.88-26.5734.67
118C_C940:G928_C0.2520.019-0.44712.6396.025-0.131
120C_C942:G925_C0.4781.3471.415-46.9339.884-30.989
17C_C948:G964_C0.0810.020.657-0.178-18.913-1.806
18C_C949:G963_C0.24-0.0120.3135.979-22.0424.194
19C_C950:G962_C0.0920.078-0.21410.011-19.124.713
11C_G901:C971_C-0.066-0.0121.05220.969-10.2960.43
14C_G905:C967_C-0.17-0.015-0.396-17.9062.8770.61
15C_G906:C966_C-0.169-0.3431.50713.711-12.9221.744
16C_G907:C965_C-0.193-0.5821.163-20.5-23.565-10.597
121C_G910:C924_C-0.163-0.114-0.754.115-3.2420.252
124C_G913:G909_C5.698-0.8071.614-26.55927.883-108.444
126C_G915:A946_C1.979-5.7571.129-2.71813.314-166.296
114C_G918:C955_C-0.4070.136-0.288-26.838-29.8686.234
119C_G941:C927_C-0.2960.1260.012-20.365-8.0522.053
110C_G951:C961_C-0.232-0.1280.252-0.059-16.4722.312
111C_G952:C960_C-0.273-0.2680.165-14.532-19.9426.199
127C_U920:A958_C-3.4092.235-1.10751.409-11.212-101.326
116C_U938:A930_C0.085-0.1010.0918.379-21.3347.115
112C_U953:A957_C4.435-3.0280.609-7.03613.169-84.405
113C_U954:G917_C-0.015-6.4880.50518.57214.735-109.777

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.