2DU4: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: PR0220 PDB ID: 2DU4

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	CC_A904G905:C967U968_CC	-2.233	-1.387	3.324	-4.76	0.556	22.421	-3.703	3.792	3.677	1.41	12.066	22.921
1	20	CC_A912G913:G909U922_CC	0.985	-2.64	2.875	5.338	10.77	121.888	-1.591	-0.521	2.758	6.153	-3.05	122.237
1	22	CC_A914G915:A946U908_CC	-1.955	-2.329	2.588	15.845	-16.457	96.552	-1.32	1.498	2.605	-10.912	-10.506	98.56
1	12	CC_A937U938:A930C931_CC	0.416	-0.615	2.952	-3.831	4.809	45.664	-1.153	-0.824	2.835	6.164	4.91	46.054
1	1	CC_C903A904:U968G969_CC	2.335	-0.78	3.772	5.439	25.05	38.888	-3.435	-2.439	3.052	33.567	-7.289	46.302
1	19	CC_C911A912:U922G923_CC	0.919	-1.449	3.915	-1.922	28.544	25.312	-5.905	-1.658	1.518	49.216	3.314	38.023
1	14	CC_C939C940:G928G929_CC	-0.754	-1.586	3.888	-3.45	13.06	31.856	-4.92	0.676	3.084	22.569	5.962	34.533
1	15	CC_C940G941:C927G928_CC	0.657	-1.928	3.821	3.004	16.447	31.033	-5.749	-0.62	2.56	28.312	-5.17	35.153
1	17	CC_C942G910:C924G925_CC	-4.726	-2.557	1.974	23.819	-11.807	76.19	-1.84	3.975	1.022	-9.306	-18.773	80.025
1	6	CC_C948C949:G963G964_CC	-0.105	-1.971	2.803	3.391	6.736	36.511	-3.803	0.526	2.396	10.612	-5.343	37.256
1	7	CC_C949C950:G962G963_CC	-0.396	-1.416	3.0	2.214	6.318	28.289	-4.025	1.21	2.591	12.703	-4.451	29.055
1	8	CC_C950G951:C961G962_CC	0.656	-1.551	3.333	-1.741	13.517	29.788	-4.9	-1.441	2.383	24.73	3.186	32.694
1	3	CC_G905G906:C966C967_CC	2.176	-2.274	1.853	-10.184	12.113	23.128	-5.496	-5.168	-0.216	26.588	22.354	27.963
1	4	CC_G906G907:C965C966_CC	-1.148	-1.917	3.73	-2.46	6.988	48.058	-2.926	1.185	3.487	8.521	3.0	48.593
1	5	CC_G907C948:G964C965_CC	-0.814	-1.438	2.948	8.131	-3.439	37.878	-1.786	2.111	2.835	-5.212	-12.323	38.856
1	18	CC_G910C911:G923C924_CC	-0.071	-1.359	3.364	6.447	-4.116	37.609	-1.529	0.954	3.43	-6.304	-9.875	38.352
1	21	CC_G913A914:U908G909_CC	0.76	3.857	3.163	-7.753	-19.632	-24.329	-1.981	-0.597	4.914	38.582	-15.237	-32.105
1	23	CC_G915U920:A958A946_CC	6.23	0.016	-4.128	-10.713	-154.061	105.145	-1.28	-3.054	-3.576	-79.594	5.535	164.543
1	16	CC_G941C942:G925C927_CC	0.595	-3.352	5.589	-20.738	4.544	49.468	-4.19	-2.809	4.708	5.165	23.569	53.567
1	9	CC_G951G952:C960C961_CC	0.517	-2.099	3.64	1.541	6.643	32.228	-4.898	-0.635	3.176	11.803	-2.737	32.923
1	10	CC_G952U953:A957C960_CC	-1.612	-2.027	3.14	-0.367	-1.398	93.631	-1.365	1.099	3.168	-0.958	0.251	93.64
1	13	CC_U938C939:G929A930_CC	0.715	-0.851	3.03	4.861	1.311	34.367	-1.614	-0.501	3.065	2.204	-8.172	34.722
1	11	CC_U953U954:G917A957_CC	1.353	-1.085	3.262	12.81	0.425	41.883	-1.5	-0.52	3.5	0.578	-17.436	43.716

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.