2EEU: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: UR0113 PDB ID: 2EEU

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A17:U79_A	0.144	-0.139	0.168	-0.205	-15.368	3.295
1	5	A_A19:U77_A	-0.038	0.034	-0.097	-7.67	-9.658	8.644
1	7	A_A21:U75_A	0.227	-0.134	0.037	2.594	-14.315	4.118
1	22	A_A59:U67_A	0.124	0.022	0.1	-2.533	-6.833	2.551
1	25	A_A64:A35_A	4.32	1.25	0.27	-1.091	2.105	-110.483
1	4	A_C18:G78_A	-0.088	-0.02	0.163	2.293	-17.004	3.921
1	13	A_C28:G42_A	-0.094	-0.112	0.01	4.184	-6.945	-0.431
1	10	A_C53:G46_A	0.114	-0.03	-0.568	23.922	-6.074	-2.312
1	17	A_C54:G72_A	0.286	-0.172	0.167	-6.936	-13.41	2.876
1	21	A_C58:G68_A	0.304	-0.291	0.159	4.97	-13.357	1.269
1	23	A_C60:G38_A	0.097	-0.091	0.436	-17.239	-11.812	-0.808
1	24	A_C61:G37_A	0.136	-0.178	0.731	-3.869	-10.403	-4.331
1	1	A_G15:C81_A	0.015	-0.048	0.119	-4.15	-1.659	-9.065
1	2	A_G16:C80_A	0.15	-0.025	0.052	1.687	-19.775	2.674
1	12	A_G27:C43_A	-0.392	0.037	0.041	6.228	-3.448	-6.811
1	14	A_G29:C41_A	-0.421	-0.147	0.25	5.109	-11.874	0.361
1	16	A_G31:C39_A	-0.321	-0.165	0.092	4.724	-6.701	1.199
1	18	A_G55:C71_A	-0.058	-0.155	0.146	-6.413	-10.973	-0.898
1	19	A_G56:C70_A	-0.28	-0.233	0.229	2.171	-11.077	-1.753
1	20	A_G57:U69_A	-2.334	-0.661	0.088	4.6	-13.862	-1.827
1	26	A_G62:U63_A	7.913	1.689	0.756	-2.354	5.54	14.035
1	6	A_U20:A76_A	0.208	-0.139	0.228	-10.133	-14.629	6.074
1	11	A_U25:A45_A	-0.264	-0.135	0.202	1.051	-8.542	4.875
1	15	A_U30:A40_A	0.007	-0.139	-0.034	4.742	-3.984	2.891
1	8	A_U51:U47_A	-3.692	-0.717	1.142	-27.623	36.611	-69.854
1	9	A_U52:A22_A	-0.028	-0.144	0.139	-11.131	1.02	4.811

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.