A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: UR0113  PDB ID: 2EEU 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A17:U79_A0.144-0.1390.168-0.205-15.3683.295
15A_A19:U77_A-0.0380.034-0.097-7.67-9.6588.644
17A_A21:U75_A0.227-0.1340.0372.594-14.3154.118
122A_A59:U67_A0.1240.0220.1-2.533-6.8332.551
125A_A64:A35_A4.321.250.27-1.0912.105-110.483
14A_C18:G78_A-0.088-0.020.1632.293-17.0043.921
113A_C28:G42_A-0.094-0.1120.014.184-6.945-0.431
110A_C53:G46_A0.114-0.03-0.56823.922-6.074-2.312
117A_C54:G72_A0.286-0.1720.167-6.936-13.412.876
121A_C58:G68_A0.304-0.2910.1594.97-13.3571.269
123A_C60:G38_A0.097-0.0910.436-17.239-11.812-0.808
124A_C61:G37_A0.136-0.1780.731-3.869-10.403-4.331
11A_G15:C81_A0.015-0.0480.119-4.15-1.659-9.065
12A_G16:C80_A0.15-0.0250.0521.687-19.7752.674
112A_G27:C43_A-0.3920.0370.0416.228-3.448-6.811
114A_G29:C41_A-0.421-0.1470.255.109-11.8740.361
116A_G31:C39_A-0.321-0.1650.0924.724-6.7011.199
118A_G55:C71_A-0.058-0.1550.146-6.413-10.973-0.898
119A_G56:C70_A-0.28-0.2330.2292.171-11.077-1.753
120A_G57:U69_A-2.334-0.6610.0884.6-13.862-1.827
126A_G62:U63_A7.9131.6890.756-2.3545.5414.035
16A_U20:A76_A0.208-0.1390.228-10.133-14.6296.074
111A_U25:A45_A-0.264-0.1350.2021.051-8.5424.875
115A_U30:A40_A0.007-0.139-0.0344.742-3.9842.891
18A_U51:U47_A-3.692-0.7171.142-27.62336.611-69.854
19A_U52:A22_A-0.028-0.1440.139-11.1311.024.811

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.