A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2022 number of released structures: 12231
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NDB ID: PR0185  PDB ID: 2EZ6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_A15:G12_C-6.914-5.2880.569-16.9493.463-12.221
13C_A17:U10_C-0.34-0.373-0.0152.318-8.481.198
113C_A27:U28_D0.089-0.1930.133-3.246-9.251-0.398
18C_C22:G5_C0.264-0.2130.053-1.758-7.8211.468
19C_C23:G4_C0.455-0.138-0.129-2.904-7.4611.075
12C_G16:C11_C0.042-0.142-0.105-4.8449.1484.067
14C_G18:U9_C-1.98-0.4660.2692.505-12.8491.184
16C_G20:C7_C-0.152-0.267-0.106-4.425-8.098-2.158
17C_G21:U6_C-2.356-0.578-0.067-0.762-5.585-0.608
15C_U19:A8_C-0.03-0.2030.0041.477-13.6940.466
110C_U24:A3_C0.251-0.1710.0086.193-1.1623.556
111C_U25:A2_C-0.117-0.107-0.3010.217-9.629-2.256
112C_U26:A1_C-0.224-0.1560.148-4.115-1.5545.165
114C_U28:A27_D0.036-0.2370.0870.849-9.3160.162
115D_A1:U26_D0.282-0.0020.065-2.021-3.4327.25
116D_A2:U25_D0.233-0.084-0.1420.438-7.516-1.499
117D_A3:U24_D-0.267-0.1860.021-1.839-5.994.116
122D_A8:U19_D0.113-0.1030.07-1.628-12.4642.716
121D_C7:G20_D0.354-0.275-0.0275.933-9.8672.162
125D_C11:G16_D0.254-0.155-0.1996.079.6952.611
118D_G4:C23_D-0.23-0.094-0.117-0.405-7.601-0.15
119D_G5:C22_D-0.326-0.146-0.1150.28-3.781-0.998
126D_G12:A15_D6.832-5.1340.72619.1286.899-9.68
120D_U6:G21_D2.23-0.511-0.2092.429-8.2313.609
123D_U9:G18_D2.181-0.6070.286-2.551-9.2651.314
124D_U10:A17_D-0.067-0.141-0.2564.266-7.2524.124

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.