A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: DR0029  PDB ID: 2F4U 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16A_A1410:U1490_B-0.149-0.1020.1553.692-14.842-2.628
113A_A1493:A1408_B-2.293-3.640.386-18.093-31.43577.712
12A_C1404:G1497_B-0.5-0.1260.094.216-10.079-1.534
14A_C1407:G1494_B0.392-0.423-0.0996.8991.96-1.522
15A_C1409:G1491_B-0.949-0.041-0.1128.679-17.2242.907
17A_C1411:G1489_B-0.236-0.120.351.084-12.7763.235
18A_C1412:G1488_B-0.395-0.124-0.2815.198-10.0011.973
116A_C1496:G1405_B0.311-0.421-0.0575.311-13.8010.695
118A_C1498:G1403_B1.0020.042-0.2060.673-1.4272.843
11A_G1403:C1498_B-0.748-0.3590.2119.321-1.323-10.506
13A_G1405:C1496_B-0.096-0.2310.1714.0073.6113.068
19A_G1488:C1412_B0.133-0.1940.1240.124-11.1721.111
110A_G1489:C1411_B-0.179-0.2160.255-1.1-16.953.803
112A_G1491:C1409_B0.287-0.2910.591-2.185-15.944-8.35
114A_G1494:C1407_B1.048-0.2680.01316.625-0.807-5.417
117A_G1497:C1404_B0.6160.2440.167-2.549-4.17514.021
111A_U1490:A1410_B0.717-0.2030.402-3.488-7.763-0.423
115A_U1495:U1406_B-1.025-2.3570.244-2.976-3.797-1.149

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.