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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
2F87
PDB ID:
2F87
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
A_C3:G10_A
0.823
-0.506
-1.039
-6.442
-6.02
3.448
1
1
A_G1:C12_A
-0.886
-0.246
-0.1
13.275
11.933
-1.762
1
2
A_G2:C11_A
0.401
0.062
-0.12
19.353
5.512
-1.699
1
5
A_G5:G8_A
7.52
-5.671
1.673
32.212
-0.608
-35.639
1
4
A_U4:G9_A
1.588
-0.426
-0.615
6.775
15.614
-11.15
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.