2F87: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 30-Nov-2022 number of released structures: 12490

Search for released structures

NDB ID: 2F87 PDB ID: 2F87

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_C3:G10_A	0.823	-0.506	-1.039	-6.442	-6.02	3.448
1	1	A_G1:C12_A	-0.886	-0.246	-0.1	13.275	11.933	-1.762
1	2	A_G2:C11_A	0.401	0.062	-0.12	19.353	5.512	-1.699
1	5	A_G5:G8_A	7.52	-5.671	1.673	32.212	-0.608	-35.639
1	4	A_U4:G9_A	1.588	-0.426	-0.615	6.775	15.614	-11.15

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.