A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Dec-2021 number of released structures: 11785
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NDB ID: 2FY1  PDB ID: 2FY1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13B_A111:U127_B-0.101-0.092-0.466-7.302-8.2091.115
14B_C112:G126_B0.429-0.229-0.187-1.765-6.45-0.605
18B_C116:G122_B0.117-0.156-0.391-4.72317.379-5.388
11B_G109:C129_B-0.43-0.159-0.1931.196-5.595-0.55
12B_G110:C128_B-0.332-0.126-0.14-6.276-5.274-2.41
16B_G114:C124_B0.809-0.178-0.928-21.770.014-4.442
15B_U113:A125_B0.293-0.1570.2-9.34-10.987-2.172
17B_U115:A123_B-0.216-0.009-0.278-19.3894.641-6.186

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.