A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: DR0030  PDB ID: 2G5K 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
112A_A15:U33_B0.531-0.2650.408-9.678-1.848-2.175
113A_A17:C32_B5.516-0.7540.504-20.663-0.78662.912
12A_C4:G45_B0.033-0.4340.1476.7933.558-3.952
15A_C7:G42_B0.412-0.224-0.0753.991-7.395-14.088
16A_C9:A40_B-5.519-0.7570.49920.159-0.85962.937
18A_C11:G37_B-0.767-0.113-0.19419.314-9.6153.508
19A_C12:G36_B0.064-0.1610.0281.926-5.243.891
116A_C21:G28_B-0.299-0.445-0.0430.878-12.638-0.16
118A_C23:G26_B0.837-0.325-0.0491.8771.051-0.37
11A_G3:C46_B-0.836-0.326-0.017-1.621.022-0.237
13A_G5:C44_B0.295-0.454-0.046-0.863-12.505-0.203
110A_G13:C35_B-0.062-0.1630.029-1.876-5.1323.87
111A_G14:C34_B0.765-0.111-0.198-19.529-9.5363.519
114A_G19:C30_B-0.419-0.217-0.072-4.069-7.453-14.032
117A_G22:C27_B-0.027-0.4220.121-7.4613.172-3.976
14A_U6:U43_B2.403-2.0110.526-2.538-13.5334.193
17A_U10:A38_B-0.531-0.2630.4089.441-1.921-2.119
115A_U20:U29_B-2.405-2.0010.512.349-13.784.263

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.