2G5K: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: DR0030 PDB ID: 2G5K

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	11	AA_A15A17:C32U33_BB	0.783	0.073	3.389	0.881	0.415	73.236	0.047	-0.627	3.397	0.348	-0.738	73.242
1	2	AA_C4G5:C44G45_BB	-0.237	-1.798	3.424	0.384	6.082	31.037	-4.421	0.506	3.022	11.23	-0.709	31.615
1	5	AA_C9U10:A38A40_BB	-0.785	0.076	3.384	-0.976	0.478	73.226	0.048	0.626	3.394	0.401	0.818	73.233
1	7	AA_C11C12:G36G37_BB	-0.348	-2.08	3.597	-4.31	7.355	34.579	-4.521	-0.085	3.123	12.147	7.117	35.583
1	8	AA_C12G13:C35G36_BB	0.001	-1.495	3.192	-0.008	8.728	31.073	-4.113	-0.002	2.685	15.903	0.014	32.247
1	14	AA_C21G22:C27G28_BB	0.233	-1.79	3.446	-0.071	6.112	31.079	-4.412	-0.44	3.047	11.27	0.13	31.66
1	1	AA_G3C4:G45C46_BB	-0.732	-1.99	3.138	-1.905	-1.856	36.597	-2.912	0.907	3.264	-2.952	3.029	36.691
1	3	AA_G5U6:U43C44_BB	0.538	-1.574	3.16	-2.95	6.41	40.248	-2.908	-1.07	2.842	9.229	4.248	40.836
1	9	AA_G13G14:C34C35_BB	0.35	-2.082	3.603	4.299	7.454	34.568	-4.539	0.081	3.121	12.308	-7.099	35.591
1	10	AA_G14A15:U33C34_BB	0.055	-2.085	2.818	0.487	6.152	26.544	-5.645	-0.021	2.286	13.173	-1.044	27.239
1	12	AA_G19U20:U29C30_BB	0.562	-1.923	2.922	-8.546	4.177	26.57	-4.753	-2.798	2.31	8.741	17.881	28.192
1	15	AA_G22C23:G26C27_BB	0.735	-1.973	3.117	1.878	-1.982	36.544	-2.874	-0.917	3.248	-3.155	-2.99	36.643
1	4	AA_U6C7:G42U43_BB	-0.57	-1.923	2.917	8.628	4.025	26.578	-4.72	2.828	2.311	8.42	-18.048	28.203
1	6	AA_U10C11:G37A38_BB	-0.06	-2.085	2.818	-0.515	6.165	26.525	-5.651	0.025	2.284	13.21	1.104	27.224
1	13	AA_U20C21:G28U29_BB	-0.541	-1.571	3.158	2.702	6.275	40.215	-2.896	1.052	2.85	9.046	-3.896	40.768

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.