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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
DR0030
PDB ID:
2G5K
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
11
AA_A15A17:C32U33_BB
0.783
0.073
3.389
0.881
0.415
73.236
0.047
-0.627
3.397
0.348
-0.738
73.242
1
2
AA_C4G5:C44G45_BB
-0.237
-1.798
3.424
0.384
6.082
31.037
-4.421
0.506
3.022
11.23
-0.709
31.615
1
5
AA_C9U10:A38A40_BB
-0.785
0.076
3.384
-0.976
0.478
73.226
0.048
0.626
3.394
0.401
0.818
73.233
1
7
AA_C11C12:G36G37_BB
-0.348
-2.08
3.597
-4.31
7.355
34.579
-4.521
-0.085
3.123
12.147
7.117
35.583
1
8
AA_C12G13:C35G36_BB
0.001
-1.495
3.192
-0.008
8.728
31.073
-4.113
-0.002
2.685
15.903
0.014
32.247
1
14
AA_C21G22:C27G28_BB
0.233
-1.79
3.446
-0.071
6.112
31.079
-4.412
-0.44
3.047
11.27
0.13
31.66
1
1
AA_G3C4:G45C46_BB
-0.732
-1.99
3.138
-1.905
-1.856
36.597
-2.912
0.907
3.264
-2.952
3.029
36.691
1
3
AA_G5U6:U43C44_BB
0.538
-1.574
3.16
-2.95
6.41
40.248
-2.908
-1.07
2.842
9.229
4.248
40.836
1
9
AA_G13G14:C34C35_BB
0.35
-2.082
3.603
4.299
7.454
34.568
-4.539
0.081
3.121
12.308
-7.099
35.591
1
10
AA_G14A15:U33C34_BB
0.055
-2.085
2.818
0.487
6.152
26.544
-5.645
-0.021
2.286
13.173
-1.044
27.239
1
12
AA_G19U20:U29C30_BB
0.562
-1.923
2.922
-8.546
4.177
26.57
-4.753
-2.798
2.31
8.741
17.881
28.192
1
15
AA_G22C23:G26C27_BB
0.735
-1.973
3.117
1.878
-1.982
36.544
-2.874
-0.917
3.248
-3.155
-2.99
36.643
1
4
AA_U6C7:G42U43_BB
-0.57
-1.923
2.917
8.628
4.025
26.578
-4.72
2.828
2.311
8.42
-18.048
28.203
1
6
AA_U10C11:G37A38_BB
-0.06
-2.085
2.818
-0.515
6.165
26.525
-5.651
0.025
2.284
13.21
1.104
27.224
1
13
AA_U20C21:G28U29_BB
-0.541
-1.571
3.158
2.702
6.275
40.215
-2.896
1.052
2.85
9.046
-3.896
40.768
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.