A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: UR0086  PDB ID: 2GQ4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11K_0C79:0G97_L-0.787-0.2470.0449.6855.8284.764
16K_0C84:0G92_L-1.0080.2210.099-2.1083.65-7.266
13K_0G81:0U95_L2.401-0.551-0.239-9.789.407-0.118
14K_0G82:0C94_L0.191-0.1620.2070.57810.184-1.053
15K_0G83:0C93_L0.194-0.1270.024-8.47215.525-2.121
17K_0G85:0C91_L0.368-0.10.2831.31313.781-0.689
18K_0G86:0C90_L0.191-0.161-0.012-7.415.0265.521
12K_0U80:0G96_L-2.488-0.551-0.17815.20815.113-0.577
19M_0C79:0G97_N-0.177-0.0890.046-3.643-6.5492.748
114M_0C84:0G92_N-0.229-0.116-0.0251.23513.9541.685
111M_0G81:0U95_N2.396-0.607-0.132-4.75610.4511.101
112M_0G82:0C94_N0.174-0.0770.109-1.4468.6612.605
113M_0G83:0C93_N0.268-0.097-0.018-2.37513.804-0.041
115M_0G85:0C91_N0.157-0.0410.115-8.30418.407-2.545
116M_0G86:0C90_N0.212-0.1380.092-7.4579.2433.82
110M_0U80:0G96_N-2.507-0.603-0.30311.2388.8611.256

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.